NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247722_10000014

Scaffold Ga0247722_10000014


Overview

Basic Information
Taxon OID3300028027 Open in IMG/M
Scaffold IDGa0247722_10000014 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 3H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)160081
Total Scaffold Genes151 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)94 (62.25%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007255Metagenome / Metatranscriptome354Y
F009382Metagenome / Metatranscriptome318Y
F009453Metagenome / Metatranscriptome317Y
F010748Metagenome / Metatranscriptome299Y
F015306Metagenome255Y
F022821Metagenome / Metatranscriptome212Y
F025447Metagenome201Y
F062384Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0247722_10000014103F009453N/AMASAGTLLSDLDGKAPVLNHKDDDLVNKILADMNLPSSSNPVMNAPSGRMIQDPNPNTTYPVSMDPATATAHMIGKDYPSPADFANMMHSPSYRPGDSSYAPIMSQQAPPTLVEPAKNNMYAEILTQIKQPLIVSIIVFLLSLPIVHVLIGHYVPSLLRIGGDLTTAGLVVKSLLGGFLFWFIQKVLVPLMVVS
Ga0247722_10000014139F007255GGAVRFSRTFYIMTPVWFPWMFVGGILFIVLSFIGAKYKEKEYRSIQFLQDFISGSILIAFTGVLIPDVFPAFPALSMLSLPTQDAFDEMEMVQVGPPRLMRR
Ga0247722_1000001427F010748GAGMTSCLYSGGLNYQQGNPVRQEIVSVRREVDSLRKLVEELTEENLVYRKHLMKLTAEGEKGSEELVKDLMSLAHSSDAKARREAGGGTVQGGGFRR
Ga0247722_1000001439F025447GAGMSDQVPVQGSEYRKQILPVVNVSRTSNPNIDGFADSGLGFFGSPYKPADAMLTPPQIGVQVGDSMESVVNAIKGVGFYTDQIGFGAPSTAFTRGMPLKPLGVNYFIKTGQTCSNGADMWHYMNGIPEGNALGENMKRVMAEMGMPPLQGLAPGMLEDVENALNPSPLINAMFGSGYPRCKQVTLPVGDSYGRIADGSTQESWITDPKTARWNGSSYVQTRWVQDTDNKGNPVNLDRETWARGPITFNADGTPKQQEGFDMLTRPATILVVGALCAIAFAVMRKR
Ga0247722_1000001451F022821N/AMAQWIIESEVIIRAVDKPFGDRQVLGMFSTSDDAYHFIEKYIADTKELHTYFSRSMICSKEEYEDRIRHGRIVAMNVVLGQFEDMIYVRTS
Ga0247722_1000001470F062384GGTGGMGQMAASSMVAMSPLDTVLHLFNTNPYFIGLMMLILNLGGRFIGLEVTKQQEQFLQLPWVRRILIFTVLFVATRSIWVAFWATLGVVLFLGYLFNENSALCLFGTNGKKGSSCEKKEGEMTPEEKEILHRLSSKASRYVVKEDPEEDHVPAKDIYAANMTLLHM
Ga0247722_1000001475F009382AGCAGMDLSTSFPIAWGTEYRAAQRSQPPMKDMFPVRDARYPAYAGVMSDGRQVTDYRPQCSKNVAPHAQFHTKRWMIQHADHLMEEARRRQVEWSGASLPMANTVPPPARVVRSTPFSSVATDTNLKHGHGVERADAQAPPLFGTFSYEPTMSEIQNNRKNIHGTTIQEGGRNSKRGT
Ga0247722_1000001493F015306GAGMSIHNTTPRFEKAKIPRFHRLDVAHISAIEALYTNFPFLRQRMEIHMPFSRARSTFSSGSLWLWPKFDKRPVGYLIFLEGFSPCIWYPERQEGMTFRWLLPPSFSQQGATICLANLLAGESVLQMEDIIVYEGRDLWSHQTFSERWASLRQFWHSLPPDQPLLAFQPRVVTPIPLSEWHLHYHSAVYWIIQTDQARQPRWYWRDVVTVVEHKPVEFIAPVMKRSAEIISVLCALCLPYANMSLPDTYSLVSQEGTSLGMASLPNMAMSLELRGKMVTKGIPVEVVWKPAFQKYQVTRILPEHTPITTASFFFHRT

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