Scaffold Ga0256846_1007736

Overview

Basic Information

• Taxon OID: 3300028026
• Scaffold ID: Ga0256846_1007736
• Source Dataset Name: Tube worm associated microbial communities from hydrothermal vent at the East Pacific Rise, Pacific Ocean - Tevnia
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2129
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Integument → Unclassified → Unclassified → Tube Worm Surface → Marine Microbial Communities From Hydrothermal Vents In The Atlantic And Pacific Ocean

Source Dataset Sampling Location

• Location Name: Pacific Ocean: East Pacific Rise
• Coordinates
  • Lat. (^o): 9.8441
  • Long. (^o): -104.2969
  • Depth (m): 2511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103060	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256846_10077361	F103060	N/A	LKKYVLSQLGYPAVDVEITEDQFESVLRVTGDFISTYFPREQKLSVFWTQPLVPTYPMPEDAYWIQEVSWDPVTTRIDDVFGAESFLFNIGNISGIQNILTDYHLLQAYRRFSQKILGTEGHWEVLGEGDGGPGDQKIRLYPTPKGSFPVVVLYMPVVNHFRSPQSKYIAHKMLLAEAKMMVGAARRKIAGIPMPDGGALSLDGDAMVAEGKEEKQNIIKEALDLGEPLSIYKW