NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1063871

Scaffold Ga0247723_1063871


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1063871 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1010
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006587Metagenome369Y
F012016Metagenome284Y
F014840Metagenome259Y
F066489Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10638712F012016AGGTGGMQETLNNGLPKQPYAWATEEFNINGDLVWSSITQFRPKELSWIRDLPNKKHYITITPLYKCEEKAEKITGVKSYRESTQRLTDAFNGL
Ga0247723_10638713F066489AGGAGVNLRNALLMLLMAFNLGCVSLATSVATQAGVQVVGEQYLIAQNKPIIRCNLYNVMQGNKMCRVYRQYRRV
Ga0247723_10638714F006587AGGAGMNNKYEGTGFTVVGFIIGCCLTWAVMQSIHVQKKYAMNLKCVQGELYEEIKPNFYVKSHLECFEVRTLAP
Ga0247723_10638715F014840N/AMIPFSYAVVDDEGEVIRKYRWSVKEAKWFTEKNPHAKVIRLDQEPKQTATQIQ

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