Scaffold Ga0247723_1018701

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1018701
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2390
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F011938	Metagenome / Metatranscriptome	285	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10187013	F000671	GAGG	MEKILCYSCNKSKNKLDVKKSTLLPINLLICESCHSAKLEPRWVIILSGRANGSDHVKEFIIKRRYIGNEISASELLV
Ga0247723_10187014	F011938	N/A	MESDASWRANPVKEYYDTTHIVFIHAEQCHGTVEKLGAWASIVRYNKDGIEHNELMENEEFTIIDEIVFKHVEESE
Ga0247723_10187015	F000473	AGAAG	MFIDKSADKQREHFKYGINQWTGEPNKPVFYTEEMKKKVHQIQKPSMLLMDIVMYPDFLALRLYEDNFLQFDGIKKEMVIDYVGKVKKLIESYGVRCELEGKPSERIL