NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1013334

Scaffold Ga0247723_1013334


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1013334 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3046
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001229Metagenome / Metatranscriptome741Y
F001900Metagenome / Metatranscriptome620Y
F036123Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10133341F000258GGAGGVTANYKLDAMLELRKYLWKELYTRNIFDEDEYWSDNLNENIVPIIPVQQAAEMNQFLSGKKHIVYDKIGMSYEDNWLICCEQILFTIYSTSVSDINEIRNYMTDEFRRMDESARDINKWTGLSNKFKFHSVWIADISPTAPSEELQGFFSAEVVLEIKYSRITDSIGNSPTAGRFL
Ga0247723_10133342F001900GGAMLVQAASGLERMMYANQNGPLKDSTVAQISAYVYYEAAVLSKLTTNAQFKALFTKTIFDQINLDFGNYIDALARSKPKSLHHVYEWKKTGNKTARLFKLNKISEDGLSFRLNYEFLPSRSMVPGASGKRRHMFANKASVMEAGKPLVIRPKNAERLVFEIDGETVFMPKGKSVTVRRPGGSGSTNQFTLAHSRFFSSNLVNASIKSSGFQRIFNSSMSKALRVPSNIKKVQYSFSPNLIRSQADAALAASFGGVM
Ga0247723_10133343F001229GAGMNSIVDSVLSMNLDVYRQSEIQDTDTGAIVREWNFYKTVPCHVKGVISNSATTRSSDKQIFSNKYLNDQVIQVRTAEKLTAREKVTNIRDSEGNTIWNEINYPSETPTVFEVMGTTPVTDPFGRVIAYNSSMKRSENQQIGQ
Ga0247723_10133345F036123N/APKAEQPENTVLVRMTRDNFRYDIMGFTFTKEHPFIAMSNEAAQAIFDKEEGFRLATPREVQEYYN
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