NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1008445

Scaffold Ga0247723_1008445


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1008445 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4250
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011756Metagenome / Metatranscriptome287Y
F014714Metagenome / Metatranscriptome260N
F022400Metagenome214Y
F034906Metagenome173Y
F072283Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100844512F072283AGGAGGMQTMQDLIDQIKTILPNALIIDTDSGILIETGLELGLGGLLQTLEREGE
Ga0247723_10084452F014714GGTGGLGIELKEPELLDYLKEFYYSDLEKSEEFDNWDCISLEHKMFIELKSRKTHYPDLLIEESKYQGLIMAAGIRSLTPWYINATPEGIWGFNLSTIPQPKWEDKWLPITTEFANKASRTKLVGFLKIEDGILF
Ga0247723_10084455F022400AGGMRRTTIERSQRPTLRLVGAGVGERASAYSPFGPVRAGLIITQRTNEDQVLTELLNSLERKIVELSIKSCEVLNIFLSDTEHLARRTGSSSRTDITDSI
Ga0247723_10084456F034906GAGMNNTHRVKAAADQAVRQRNYLRARSRALTRLANDYPDVYQLYLEEEKMADEKMGKKWLDIDGNTSLTDTRTR
Ga0247723_10084458F011756AGGAGGVSEPRYLSGDEYAHTGGYEDLVNCKECAVEYDRTEYRSDTCSDCEDKIIKREKERV
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