Scaffold Ga0247723_1008033

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1008033
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4410
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022870	Metagenome	212	Y
F024101	Metagenome	207	Y
F033009	Metagenome / Metatranscriptome	178	Y
F042303	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100803316	F042303	GGAG	MITMYSKTYYRIENTKYFLSNAWDTIKYHVSNVVDTIKYTHDETWLAIVLVSTWIFCAVFATWSY
Ga0247723_100803318	F022870	GAGG	MRLTQRGKYAVVITYTIIMTLLLVMVWNKYDKKGCVDKYTADILATQFLYGEGIDVDRAMTAIYNNGGWVEEELTPDVEVIFPCLKNEELI
Ga0247723_10080333	F024101	AGGAG	MAKEKPIHKMVEEVFDKDITKELIDELAEEKTFIVNTLKKFVEHDEIWIQLVDNIEARKNFLTNLQMLFLNDIENSTLIELATTKWGND
Ga0247723_10080338	F033009	AGAAGG	VSNSTQLWWKGAITQFGDMQKVYDDETLWTLESKDGSYASVIVNGEMAKSWRQEGAWNLARKYAESLLLRREQLEQEGWVTN