Scaffold Ga0247723_1007320

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1007320
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4689
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F004110	Metagenome	452	Y
F031792	Metagenome	181	Y
F044984	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100732011	F004110	AGTAG	MTELHPIIYDLVPSVANTIHRRYNKHVEKDDIKQELMAWAMTRVEDHTIDLMEPIEERRRHNEQRIAWQMKRAGERYARKEKAAKSGYQTNDEAYYESATLGQLLPFVIASVIDGTVLEQAQEMIRDGQPKGSSSPAEGGNLLANLIDIKNGFLKLHQEDQALLRMRHHESFTLQQIAQVLECAISTADRRCEQALRRLQDNLGGVSPWQ
Ga0247723_10073202	F031792	GGAG	MSYEPELNDPVFYAEEGELPVKCFRCGDPLDRDDIVWADVEGQVREKEGNDTAWCVVCLPSEKGDN
Ga0247723_10073203	F000821	GGA	MNEEYLKAKFDLCISEAEKDLQQEEIARAIANLKRANSALSQLFGFEEDESE
Ga0247723_10073205	F044984	GGAGG	MTEANRRMATASRKAIRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKNWISIDGTTVLSVGVHTRANSVPDVAGHTDYESSDESYDGGEA