NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1004762

Scaffold Ga0247723_1004762


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1004762 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6300
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (95.65%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006842Metagenome363Y
F011756Metagenome / Metatranscriptome287Y
F022400Metagenome214Y
F024719Metagenome / Metatranscriptome204Y
F034906Metagenome173Y
F053128Metagenome141N
F072283Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100476210F053128GAGGMKGYFVIDRQDTGWKEGYLWKSIKEIANSIRDYDDYRELEVSNLTHSQVCELWDFEYHRLTPANCDKYGVKPSELTREYL
Ga0247723_100476211F072283AGGAGGMQTMQDLINAIKPILPNALVIDTDTGILIETGLEIGLGGLLQTLEREGE
Ga0247723_10047622F022400AGGMKRNIIRSSRKTTLRLVSAGVGESGSVSSPFGPVRAGLITTQRTSEDQVLTELLNSLERKIADLSIRSCEVLNIFLSDTKHLVRRTNSFSNTDTTDSI
Ga0247723_10047623F034906GGAMEQMKNTHRVKAAADQAVRQRNYRRARERALTRLANAFPDIYRAYLEEEKDIDENMGKKWLDIDGNTSLTNTRTQ
Ga0247723_10047624F024719AGGAGVSNVLELRNGTVKRIIFYEVSDAQDIAVWGGESPREALDWYRRSPAGSKIWVSQYEADEEEARLVLDLIEITPIVLATITDSIDRWSK
Ga0247723_10047625F011756AGGAGMSEPRYLSGDEFALSGGYEELINCNECDVMYDRVEYQSDTCSDCEDKRVAREKESK
Ga0247723_10047629F006842GGAGMKATPVICGDHLVPISECDCVNYLQELKTSAKRLVQLAKEREAMK
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