Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1004625 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6435 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (95.45%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F006618 | Metagenome | 368 | Y |
F006842 | Metagenome | 363 | Y |
F018703 | Metagenome | 233 | Y |
F022400 | Metagenome | 214 | Y |
F029021 | Metagenome | 189 | Y |
F048091 | Metagenome | 148 | Y |
F072283 | Metagenome / Metatranscriptome | 121 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247723_100462510 | F072283 | GGAG | MNTMEDLIEAIKPILPNALVIDTDSGILIETNLELGLGGLLQTIEREGE |
Ga0247723_100462511 | F006618 | AGGAG | MSKIKQHLEKQIVIKGKEHEETGWKRYVYFEYEGNEYELTLFYDEFTGYDIFWREPDSTPDWVVEWDSEAHNGMSFEHYLDDLTWENN |
Ga0247723_100462514 | F048091 | GAGG | MIEHHFIIKYSKEGGWEWDTDSEELRYSDGTVWNEQTQEWSSGYAGWSEEKGEAEYVDDDDLIGEQLTAILEIANGAKALI |
Ga0247723_10046252 | F022400 | AGTAGG | MVLYQVGRQRKMRRTTTERSQRTTLRLVSGGVGERASAYSPFGPVRVGLITTQRTSEDQVLTELLNSLERKIAELSIRSCEVLNIFLSDTKHLVRHTDSFLKTDTTDSI |
Ga0247723_10046253 | F018703 | AGGTGG | LSNTERRIETAKAQAVRQRNYRRARDRALARLGNDYPNVYRAYLEEEMKADDQMGKKWLDISGNTKSARSRSR |
Ga0247723_10046257 | F029021 | GGAG | MNLCQFCGWEIARVDWYHRYNNKLICDNCVMDTMSEREREEVR |
Ga0247723_10046259 | F006842 | GAGG | MKATPAICGDHLVPISECDCLSYMREITRSAEKLIQLTKEREAMK |
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