Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1002946 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8731 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (86.21%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005558 | Metagenome | 396 | Y |
F008237 | Metagenome | 336 | Y |
F009064 | Metagenome / Metatranscriptome | 323 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0247723_100294615 | F008237 | AGG | VIQWDRIQKWDYIVDSVASEYQLKFKIDIQDIKQNLYQWFVEHPNKLDTWEAIGEKDAKNLIYRSLRNQALDYCQAWKAKTGGYETSDLFFYQADMIEALLPSVLRGEINLAHKLNLGGTARPSAPSEGGNLMAMMIEIDAGFWKLGKEDRKLLFLRYAESMDFQAIADEMNLPSEDTARMRNKRAIKKLINKVGGFKPYRDDDLPENSEAQPPVE |
Ga0247723_100294628 | F005558 | AGAAGG | MSEMSISWGELAQLTHATQVSGFGWCWCEDNEGKENPYDDCPKEA |
Ga0247723_10029467 | F009064 | GGTGG | VIVKLSQEEVRICTMLATERWLAKFGSTDKPNYAQGKVDGKLEHELLSNVRANVCEWAVAKQYNQSWNVPWYPNSLHPQRKSLADVGANYEVRSVRTQTSIPFWKKDINNYIFGAKVLDTDYYSEVEVYGHIVPTNYMTDEWYDSYIEGWRVPVEQFKE |
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