NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1002869

Scaffold Ga0247723_1002869


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1002869 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8890
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (96.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019448Metagenome229Y
F026266Metagenome198Y
F045754Metagenome / Metatranscriptome152N
F050379Metagenome145Y
F054861Metagenome139Y
F073554Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100286913F026266GAGGMTIETITFHFVGQLEDSGAIVDVQCQIDEDGDCRSLDSAMYQGINLLEVISHSQWEDLEWQGSKAYKAEKIEQQTIDHDNQSPLEAIYGLLKPSFYIR
Ga0247723_100286915F054861AGGAMNTKLLKHSRELFKSYDVPEHVRRSYRLKWVKSIRNLGDKWLFANHVERSVQRKEPTQ
Ga0247723_100286917F050379GGAGGMTDAQLQQIANDLIKQYKHEIVRDGDWWHGIDGYSFNIHSLEDDVEAEGYDWYQINVYKVDPVKGMDDYEWMIDLEPVFLGGMK
Ga0247723_100286918F019448AGGAGMTAMTKTQMINACADYEVEWFFDREPAEQREVFRYIQLHGFEGFKNVSDESLFESCVHNGTFLMEE
Ga0247723_10028698F045754GAGMTIDESKPWPFPSHFGDTAEDSKLIADCLELLQDFTAFQLRGEIYYGYLDVRALKVIEELRKDRDETKSST
Ga0247723_10028699F073554AGGAMSIEMMNNDDDFDMDLVQYECWYWSVIDSMAELVMNNGRDKVMSHVAEAVLTKAHNGHVAAQEDPFAW
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