Scaffold Ga0247723_1002708

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1002708
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9226
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000468	Metagenome	1102	Y
F001834	Metagenome / Metatranscriptome	628	Y
F002135	Metagenome / Metatranscriptome	590	Y
F002162	Metagenome / Metatranscriptome	588	Y
F002687	Metagenome / Metatranscriptome	536	Y
F007469	Metagenome / Metatranscriptome	350	Y
F017290	Metagenome / Metatranscriptome	241	N
F042333	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10027081	F002687	N/A	QYTFSQSITNADILEANVIPSGVAALSGGSTYVGNAAVQSAVYTVSVEVFQARLAGGGQIEGVDFTSTPFRMGRSLFNKCVGILGSYIDTESMCQ
Ga0247723_100270813	F002135	N/A	MANTRKSSKRKKINRRIVRRSPDPLTKLDQWYIAKHEMFRAARKAGFSESVALYLMDSPESMPNWIVGDTGIIPVIPTPDEDED
Ga0247723_100270818	F007469	AGGAGG	MGELQIIDGSGLTATFTDNGVKVDPSTVVCDNCNDDRLLHEGDLLRCYSCHAINRIPYNA
Ga0247723_100270819	F002162	N/A	MPKYDYMCDGEGLVIVLDLPMDHKIPHCQVCGAKLRRVYTAVPAIFKGTGWASKDG
Ga0247723_10027082	F001834	N/A	MADQTILEQIRTPLATALSSVAGNVYSFVPETVIPPAVVVVPDSPYLEFETISKTNIRAKINFTISVAVAYNSNPASLDNIEQLVISVLAVIPVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI
Ga0247723_100270820	F042333	GAG	MDGYDTADGFRVFQCLKCCAIGTKNLAESTDTQEPVMRCDKCGSWQFVDLPCHTCSLVNS
Ga0247723_10027083	F017290	AGGAG	MATVVITGRDVGLSFTGGTDIQAQATNAVLTKVNERQVYQTMDGEAYKTTNISGTFQLDMLADWGKANSVCEALWTAAETAPDTDISMTLTAASGAQFVFPVKPEFPTAGGGGIDAQEVSFTFTVSKGAVTETFS
Ga0247723_10027087	F000468	AGTAGG	MTAWSPDWKLTVAGVDYTDIAISDIQHQAGRTDIYQQPNPSYIQINFVALSGQTLPFAINDSLSLQVKNSTGTYVNIFGGDITDITVSVGATGSIATVVQYSVLAMGSLVKLAKELYAGTLSQDEDGNQIYTLLSSVLLGTWNDVPAASTWATYSATETWANAQNLGLGEIDQPGLYTMENRAAEVDTIFNIAQLIANSAFGYFYEDNEGNIGYADADHRQIYLLANGYVDLDARQALGQGLSTITRSGDIRNEIFINYGNNFGSQETATSATSIATYGYKGESIQSTIHSAVDAQAIADRYIAQRAFPQPAFQSITFPITNPEIDNSDRDNLLGVFMGQPLNIQNLPIQISTGEFEGYVEGWSWSTRFNELFLTINLSPVAYSQFTMRWNTVPITEAWNTLSATLTWEYATIVS