NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1002708

Scaffold Ga0247723_1002708


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1002708 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9226
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (65.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000468Metagenome1102Y
F001834Metagenome / Metatranscriptome628Y
F002135Metagenome / Metatranscriptome590Y
F002162Metagenome / Metatranscriptome588Y
F002687Metagenome / Metatranscriptome536Y
F007469Metagenome / Metatranscriptome350Y
F017290Metagenome / Metatranscriptome241N
F042333Metagenome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10027081F002687N/AQYTFSQSITNADILEANVIPSGVAALSGGSTYVGNAAVQSAVYTVSVEVFQARLAGGGQIEGVDFTSTPFRMGRSLFNKCVGILGSYIDTESMCQ
Ga0247723_100270813F002135N/AMANTRKSSKRKKINRRIVRRSPDPLTKLDQWYIAKHEMFRAARKAGFSESVALYLMDSPESMPNWIVGDTGIIPVIPTPDEDED
Ga0247723_100270818F007469AGGAGGMGELQIIDGSGLTATFTDNGVKVDPSTVVCDNCNDDRLLHEGDLLRCYSCHAINRIPYNA
Ga0247723_100270819F002162N/AMPKYDYMCDGEGLVIVLDLPMDHKIPHCQVCGAKLRRVYTAVPAIFKGTGWASKDG
Ga0247723_10027082F001834N/AMADQTILEQIRTPLATALSSVAGNVYSFVPETVIPPAVVVVPDSPYLEFETISKTNIRAKINFTISVAVAYNSNPASLDNIEQLVISVLAVIPVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI
Ga0247723_100270820F042333GAGMDGYDTADGFRVFQCLKCCAIGTKNLAESTDTQEPVMRCDKCGSWQFVDLPCHTCSLVNS
Ga0247723_10027083F017290AGGAGMATVVITGRDVGLSFTGGTDIQAQATNAVLTKVNERQVYQTMDGEAYKTTNISGTFQLDMLADWGKANSVCEALWTAAETAPDTDISMTLTAASGAQFVFPVKPEFPTAGGGGIDAQEVSFTFTVSKGAVTETFS
Ga0247723_10027087F000468AGTAGGMTAWSPDWKLTVAGVDYTDIAISDIQHQAGRTDIYQQPNPSYIQINFVALSGQTLPFAINDSLSLQVKNSTGTYVNIFGGDITDITVSVGATGSIATVVQYSVLAMGSLVKLAKELYAGTLSQDEDGNQIYTLLSSVLLGTWNDVPAASTWATYSATETWANAQNLGLGEIDQPGLYTMENRAAEVDTIFNIAQLIANSAFGYFYEDNEGNIGYADADHRQIYLLANGYVDLDARQALGQGLSTITRSGDIRNEIFINYGNNFGSQETATSATSIATYGYKGESIQSTIHSAVDAQAIADRYIAQRAFPQPAFQSITFPITNPEIDNSDRDNLLGVFMGQPLNIQNLPIQISTGEFEGYVEGWSWSTRFNELFLTINLSPVAYSQFTMRWNTVPITEAWNTLSATLTWEYATIVS

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