Basic Information | |
---|---|
Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1002708 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 9226 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (65.00%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Associated Families | 8 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000468 | Metagenome | 1102 | Y |
F001834 | Metagenome / Metatranscriptome | 628 | Y |
F002135 | Metagenome / Metatranscriptome | 590 | Y |
F002162 | Metagenome / Metatranscriptome | 588 | Y |
F002687 | Metagenome / Metatranscriptome | 536 | Y |
F007469 | Metagenome / Metatranscriptome | 350 | Y |
F017290 | Metagenome / Metatranscriptome | 241 | N |
F042333 | Metagenome | 158 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0247723_10027081 | F002687 | N/A | QYTFSQSITNADILEANVIPSGVAALSGGSTYVGNAAVQSAVYTVSVEVFQARLAGGGQIEGVDFTSTPFRMGRSLFNKCVGILGSYIDTESMCQ |
Ga0247723_100270813 | F002135 | N/A | MANTRKSSKRKKINRRIVRRSPDPLTKLDQWYIAKHEMFRAARKAGFSESVALYLMDSPESMPNWIVGDTGIIPVIPTPDEDED |
Ga0247723_100270818 | F007469 | AGGAGG | MGELQIIDGSGLTATFTDNGVKVDPSTVVCDNCNDDRLLHEGDLLRCYSCHAINRIPYNA |
Ga0247723_100270819 | F002162 | N/A | MPKYDYMCDGEGLVIVLDLPMDHKIPHCQVCGAKLRRVYTAVPAIFKGTGWASKDG |
Ga0247723_10027082 | F001834 | N/A | MADQTILEQIRTPLATALSSVAGNVYSFVPETVIPPAVVVVPDSPYLEFETISKTNIRAKINFTISVAVAYNSNPASLDNIEQLVISVLAVIPVGYIVSSVERPTVTQVGASTLLIADVRVSTYYTQTI |
Ga0247723_100270820 | F042333 | GAG | MDGYDTADGFRVFQCLKCCAIGTKNLAESTDTQEPVMRCDKCGSWQFVDLPCHTCSLVNS |
Ga0247723_10027083 | F017290 | AGGAG | MATVVITGRDVGLSFTGGTDIQAQATNAVLTKVNERQVYQTMDGEAYKTTNISGTFQLDMLADWGKANSVCEALWTAAETAPDTDISMTLTAASGAQFVFPVKPEFPTAGGGGIDAQEVSFTFTVSKGAVTETFS |
Ga0247723_10027087 | F000468 | AGTAGG | MTAWSPDWKLTVAGVDYTDIAISDIQHQAGRTDIYQQPNPSYIQINFVALSGQTLPFAINDSLSLQVKNSTGTYVNIFGGDITDITVSVGATGSIATVVQYSVLAMGSLVKLAKELYAGTLSQDEDGNQIYTLLSSVLLGTWNDVPAASTWATYSATETWANAQNLGLGEIDQPGLYTMENRAAEVDTIFNIAQLIANSAFGYFYEDNEGNIGYADADHRQIYLLANGYVDLDARQALGQGLSTITRSGDIRNEIFINYGNNFGSQETATSATSIATYGYKGESIQSTIHSAVDAQAIADRYIAQRAFPQPAFQSITFPITNPEIDNSDRDNLLGVFMGQPLNIQNLPIQISTGEFEGYVEGWSWSTRFNELFLTINLSPVAYSQFTMRWNTVPITEAWNTLSATLTWEYATIVS |
⦗Top⦘ |