Scaffold Ga0247723_1002671

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1002671
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9326
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004276	Metagenome / Metatranscriptome	445	Y
F014851	Metagenome / Metatranscriptome	259	Y
F058737	Metagenome	134	N
F072327	Metagenome / Metatranscriptome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100267110	F072327	N/A	MSRETIVLLSNVTDDSQPSTWQYGEKHIGAGYYKNGNGVHTMTFELEEFKGSIKVQATLDLNPGVNDWFDVILDSSDTVLTAIDSTPVTSNAACTFTGKFVFIRVAYQLEQGTITEVRYN
Ga0247723_100267111	F058737	N/A	MLQLKTKSTSRKFYNKWLYKISLIIDGCVVFRTQPISNIKDWLTNSNSDSGYHYDNWRRATANKEIIISVCDFLSSYDADMYALRVERNRLDVYTNDPEFYEKLSLCSQDYLVHRFEPNSNNLDVLNNSQNCITVSKLPKDRYRYRVYLMPHKMAKDREGKQRYLAWLKSQTPRITCTPAIERWFLTTDWNWDRRYVLVEDESTLLMMKLRGADVVGRVYNFVVCDK
Ga0247723_10026712	F014851	AGAAG	MKIREIFETATAGSTSAGNVAIGAVYKNKPGKTAKNKDGTAKNALDLKGTNLLTGGSLVK
Ga0247723_10026718	F004276	GGAG	MLLKEMFSAIGAPKDEQQEIDWLDDLKFFIDNDSKMLDQYFFPAVKRHREHRGNPNVFKVYIRPLEQCMGHYCDKYDVDDADKKFPKDKLIDLAKRIAEEQEKHIEKGDYD