NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1002104

Scaffold Ga0247723_1002104


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1002104 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10917
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (78.26%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008296Metagenome335Y
F012001Metagenome / Metatranscriptome284Y
F015719Metagenome / Metatranscriptome252Y
F022871Metagenome212Y
F029029Metagenome / Metatranscriptome189Y
F056346Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100210410F008296N/ALNTQGWVQEYDLLVSSLASEYSRKYAMLEAEDIRQILWMWFVTHPIKYKEWSKLPAKDKEKLIAKSLRNAALKYCEKEKSNKSGYDMSDLYYYDSSVVEAFLPSILADSYEIPTKIKDLNFQFGKTGEVTDGTNWLVLRSDIQKAYNKLAEAKQNILRLKFTTDNSEWNDLAKELNTSADGARKRVERAVNSLVKILGGWRAYNDVDMIAAENEDDDDRTES
Ga0247723_100210412F022871AGGAGMSESENAWGNDKDFWDFVGDNKRLVGISVSDGQGLDILNALKDIYVMIEEEPDTAMRMLTLLGTVIYASSIGEGQQYTNEIQVLSAMENFDASIKEILDEESK
Ga0247723_100210417F056346AGGAGMSSTEAPISINLKTSGGTQITLRAETPEQFADMIATGIHTIVDAVTEVELAVKGTAASKPMSVADIASSFNSNISSTDTGGEETVEDKYGNTWVYNKPGAPSCERGVMVLKYGKAQATGKPYKAFYDPAAGPRWTGPKVPAELRTKPIFA
Ga0247723_100210419F015719AGGAGMTMYYTELDGAEPTVSFSVKDARYTLTSESLVKLIEERDALKLELAQVERKFKSAQFDVKEFFQARYETDSDEIVCEVGDVNSLLKDIGSDELTKSWSATITITATVTGIEAANKEAVEDLIQNSIDVNFTADGDIWVDDISVESVYPEA
Ga0247723_10021046F012001AGGAGMFDKEKAKQIALSYLRAAAASAVALYTAGQRDPKVLSAAFVAGLVGPILKALDKSAPEFGRTK
Ga0247723_10021049F029029GAGGMTEQNPKDISSLFKKDYSHAMDLRGNPIGDICLCGSELFTAIVAFEAGEICFYFLDGECVDCGSLVTLPTPIDDIGMDCD

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