Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1002104 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10917 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (78.26%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008296 | Metagenome | 335 | Y |
F012001 | Metagenome / Metatranscriptome | 284 | Y |
F015719 | Metagenome / Metatranscriptome | 252 | Y |
F022871 | Metagenome | 212 | Y |
F029029 | Metagenome / Metatranscriptome | 189 | Y |
F056346 | Metagenome / Metatranscriptome | 137 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247723_100210410 | F008296 | N/A | LNTQGWVQEYDLLVSSLASEYSRKYAMLEAEDIRQILWMWFVTHPIKYKEWSKLPAKDKEKLIAKSLRNAALKYCEKEKSNKSGYDMSDLYYYDSSVVEAFLPSILADSYEIPTKIKDLNFQFGKTGEVTDGTNWLVLRSDIQKAYNKLAEAKQNILRLKFTTDNSEWNDLAKELNTSADGARKRVERAVNSLVKILGGWRAYNDVDMIAAENEDDDDRTES |
Ga0247723_100210412 | F022871 | AGGAG | MSESENAWGNDKDFWDFVGDNKRLVGISVSDGQGLDILNALKDIYVMIEEEPDTAMRMLTLLGTVIYASSIGEGQQYTNEIQVLSAMENFDASIKEILDEESK |
Ga0247723_100210417 | F056346 | AGGAG | MSSTEAPISINLKTSGGTQITLRAETPEQFADMIATGIHTIVDAVTEVELAVKGTAASKPMSVADIASSFNSNISSTDTGGEETVEDKYGNTWVYNKPGAPSCERGVMVLKYGKAQATGKPYKAFYDPAAGPRWTGPKVPAELRTKPIFA |
Ga0247723_100210419 | F015719 | AGGAG | MTMYYTELDGAEPTVSFSVKDARYTLTSESLVKLIEERDALKLELAQVERKFKSAQFDVKEFFQARYETDSDEIVCEVGDVNSLLKDIGSDELTKSWSATITITATVTGIEAANKEAVEDLIQNSIDVNFTADGDIWVDDISVESVYPEA |
Ga0247723_10021046 | F012001 | AGGAG | MFDKEKAKQIALSYLRAAAASAVALYTAGQRDPKVLSAAFVAGLVGPILKALDKSAPEFGRTK |
Ga0247723_10021049 | F029029 | GAGG | MTEQNPKDISSLFKKDYSHAMDLRGNPIGDICLCGSELFTAIVAFEAGEICFYFLDGECVDCGSLVTLPTPIDDIGMDCD |
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