Scaffold Ga0247723_1002104

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1002104
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10917
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008296	Metagenome	335	Y
F012001	Metagenome / Metatranscriptome	284	Y
F015719	Metagenome / Metatranscriptome	252	Y
F022871	Metagenome	212	Y
F029029	Metagenome / Metatranscriptome	189	Y
F056346	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100210410	F008296	N/A	LNTQGWVQEYDLLVSSLASEYSRKYAMLEAEDIRQILWMWFVTHPIKYKEWSKLPAKDKEKLIAKSLRNAALKYCEKEKSNKSGYDMSDLYYYDSSVVEAFLPSILADSYEIPTKIKDLNFQFGKTGEVTDGTNWLVLRSDIQKAYNKLAEAKQNILRLKFTTDNSEWNDLAKELNTSADGARKRVERAVNSLVKILGGWRAYNDVDMIAAENEDDDDRTES
Ga0247723_100210412	F022871	AGGAG	MSESENAWGNDKDFWDFVGDNKRLVGISVSDGQGLDILNALKDIYVMIEEEPDTAMRMLTLLGTVIYASSIGEGQQYTNEIQVLSAMENFDASIKEILDEESK
Ga0247723_100210417	F056346	AGGAG	MSSTEAPISINLKTSGGTQITLRAETPEQFADMIATGIHTIVDAVTEVELAVKGTAASKPMSVADIASSFNSNISSTDTGGEETVEDKYGNTWVYNKPGAPSCERGVMVLKYGKAQATGKPYKAFYDPAAGPRWTGPKVPAELRTKPIFA
Ga0247723_100210419	F015719	AGGAG	MTMYYTELDGAEPTVSFSVKDARYTLTSESLVKLIEERDALKLELAQVERKFKSAQFDVKEFFQARYETDSDEIVCEVGDVNSLLKDIGSDELTKSWSATITITATVTGIEAANKEAVEDLIQNSIDVNFTADGDIWVDDISVESVYPEA
Ga0247723_10021046	F012001	AGGAG	MFDKEKAKQIALSYLRAAAASAVALYTAGQRDPKVLSAAFVAGLVGPILKALDKSAPEFGRTK
Ga0247723_10021049	F029029	GAGG	MTEQNPKDISSLFKKDYSHAMDLRGNPIGDICLCGSELFTAIVAFEAGEICFYFLDGECVDCGSLVTLPTPIDDIGMDCD