NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1001681

Scaffold Ga0247723_1001681


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1001681 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12585
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000220Metagenome / Metatranscriptome1544Y
F007102Metagenome / Metatranscriptome357N
F018367Metagenome / Metatranscriptome235Y
F051120Metagenome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100168111F018367GGAVIDALASAQIQWPNTETRIVLVCRAVLPSEKYGANEFLDKDGRVCRWVLEVKNVGPN
Ga0247723_100168112F007102GGAGGMLDPISAFAIAQGAIKGIQAAIKMGKDVQGITHDVMKFFDAKDKVAKEAVKDPKKKYSSDTSQAMSTVMQLHELNRAEEELKWHFINQGQSALWTQIVLERNSIVQRRRTQEILDAKAAKNRKAEIDEAITMALCVLVAAAIFFLVAWGVIAMKGKL
Ga0247723_100168113F000220AGGMSEGTLNANSTLDKVLGYVDSPFKLAAILIMGVVAFAGYFVYTNQDLLIGAYKESKKIPSIAEDRVEDASAHLFKTTNATIVAVFKVNPMFGTRVLYRAYAKDGRDKTNDGLDVGLFTNNAANNADVVKLMANEIPCGEYRTAQSEMGIWYINKGVTYTCRISVPPEPGRFVGQITVGWETEPENLESARTMLSIAATMLSRSKQ
Ga0247723_100168116F051120AGGAMSDLPNFAAWSHENLAKFSIDAYRKMQQQQETIEQLQGDFKDAMCELRKLSSAAAVNNQR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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