Scaffold Ga0247723

Basic Information
Taxon OID	3300028025 Open in IMG/M
Scaffold ID	Ga0247723_1001545 Open in IMG/M
Source Dataset Name	Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13365
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (80.77%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

13365

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

21 (80.77%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: West Virginia
Coordinates	Lat. (^o)	39.6017	Long. (^o)	-79.9761	Alt. (m)	Depth (m)	2281
Location on Map

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Source Dataset Sampling Location

Location Name

USA: West Virginia

Coordinates

Lat. (^o)

39.6017

Long. (^o)

-79.9761

Alt. (m)

Depth (m)

2281

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F003539	Metagenome / Metatranscriptome	480	Y
F030732	Metagenome	184	Y
F085350	Metagenome	111	N
F095139	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100154515	F000368	AGGAGG	MEQFKQLSLSWFRAAASAAVALYLVGETDIKTLAMAALTGFAGPLLKWLDPSATEFGRGS
Ga0247723_100154520	F030732	GGA	MFKVTVMWDEDTRAVGWYDLAQECIECGTVTTAPTEIDGDDCV
Ga0247723_100154521	F095139	N/A	MSSRPKTQTNNQIILCWCDGGSTDGKFTEGVVYAALKSTLPITSAMRVQGNQIGRQRQQALDFWYDKTDFDWILWVDSDIVLNEEALQMVWNAADPVDRPVVTGTYFISKENEGSLMSPYPAVFNWTDDDYKISYVHPLPINAVIKVGSAGFGFVLMHRNAVTAMRKVHGTVPYFNETGVGEQFVSEDINFFRMMGKAAVPLYTHTGALVKHMKRFSLDIEYYKMYWNSKSERP
Ga0247723_100154522	F003539	GAGG	MNYIEEYNPLVQQLAAEYAKRYTMLERDDIGQELWVWFVSHPRKYKEWSALEQKDRDKLIAKSLRNAALKFCEYQKARKIGYDVSDLYYYDVSVVEAFLPSIIGETYEIPTKIQDLNAKFGSGAASDGNNWLSLRSDIASAFYRLSEQKQNILRLRFSVDSPDWTMLSKEMESTPDGARMKVQRALNSLVKHLGGWKPYHEQDNQEVTAVSESTDVEQTEDADE
Ga0247723_100154525	F085350	GAG	MSESESALPPLDHTFWEHLDHLDFAIGIPVSEDRLLDVIGALHDIYDTLVAGDLEDAKMCTTALAAILVASKYGKAEEVWAEFSIKEAMTNFDDHMKDILDEE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0247723_1001545

Overview

Ecosystem & Geography

Associated Families

Sequences