NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000968

Scaffold Ga0247723_1000968


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000968 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17584
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (66.67%)
Novel Protein Genes19 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)11 (57.89%)
Associated Families19

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004583Metagenome / Metatranscriptome432Y
F007310Metagenome353Y
F008552Metagenome331Y
F009750Metagenome313Y
F011390Metagenome291Y
F013084Metagenome274Y
F013087Metagenome274Y
F015472Metagenome254Y
F018927Metagenome232Y
F023349Metagenome210N
F027516Metagenome194Y
F033432Metagenome177Y
F033803Metagenome176N
F039133Metagenome164N
F040618Metagenome161N
F043399Metagenome156N
F048994Metagenome147N
F057375Metagenome136N
F076096Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100096811F004583AGGAGMKYVRNSDRLREILVSTRHQIVSLKDIQIDLLRSNPKASTEIATQISALEEVYKHQLSLVEMTESTEPKSRGWFSGQIKSKEDRLANIMD
Ga0247723_100096812F076096AGGMICYNPEWENPLYWFDKLLTYSDHAELRSFERDLPLIDFLPINSKFLYRTMKTDVYSMTFETTVNHKKIHIAINSIGKVMTVFPVVVTKADRFQYKYKQYLGAFKQPEDYLPPVITSLDFQEVDYEYLEGVA
Ga0247723_100096813F048994AGGAGMIGIVKIEFGFMNLYVNGVCVVSTSTIAGIRHAVKRYNLQGYLMTAE
Ga0247723_100096816F007310N/AMRTVLWNNTERWFNHHHYELLIEDITGFDLQQSLCAESVKYMAKRLKDTPYNRTFRSKYSIYSDEYNALVEKFNDQANNNGKIEVA
Ga0247723_100096817F013084N/AMGIMSILGLMEETKNAVLHRGHNVKNWLVLGNDCYALECADCKKTVMIKEHPLPNEIKVSGEALATNCVKPVKEKKLRKK
Ga0247723_100096818F018927AGGMNKHIEITRHLTVDGKTTFYVVEKSKNSSSIIWNGTCKQAAYQVAYRNARKENTPLYDTLYKAEIDRNGVKHIIPIGNELLEVNN
Ga0247723_100096819F043399AGGAMKIPPSSIMLLDDYPIVIWTIVKKNNNYILLDSCGIEVFRRKENRKKEIYQYCEDNGIDFQEEF
Ga0247723_10009682F011390AGGAMEIKTTNYGVCKVKKHKYQTNGNLALSLVDETGQPVVYITTNIFPMAEDEFCANYYNMGATLWNDIVTSGLFEMTGEKVPSGYCEYPVCKLVKELA
Ga0247723_100096821F040618N/AMENTTTVRMSMVVNVKDVSDKSSCIGFVGQGTWFDGKSFIVTQYKANPTCWYFFVYDVFAPEENYFDGVNSFGNEIWHLNPDNGEMCGKTYLYSPMTDRLYVPYGISQPTKEKSPSFLFVIE
Ga0247723_100096822F009750GAGMKEIITAIYQNGKFKDNKILKPHLTDRIGIRMTFPEGAECILWTNGKKYYAVCEAFGTIFTINIPRNLGDDIWERFKTEFEGNYSYNSF
Ga0247723_100096824F013087N/AMEPTVWIYFSKTGTGYELKGSDVISGFDAFINSDGTYMVEYAFSDIKNSMHFFIYEWDNSQKKRRTIFEGYQRQNILVNFAKNVNVCHLVRQAIYQEYLMDNDEEELENANS
Ga0247723_100096825F008552N/AMIISFEASANVDTTLFGYFSMEYDPEFFSDIKENLTEISKDSLISFKLDPEDIKLLQGKFENVKRVINISDVEQNKFTNVFKRKFDSSGFKTFKYVKLHIDKDYFYFTGHHENKDGTKPVEFQSLNFDARFIDSLEKKYKENVVN
Ga0247723_100096828F033803N/AMTINLRKNIARFIYILDQTTNKDSRAKVLKELDLTEAEFTELVGALLDFSNSKDKEWYCCNPEYHAFIETFKIISEDNDYELLI
Ga0247723_10009683F027516GGAMTYQDYIIKCEVAKTVFQCGVKSSLIVENATPEQRLAWIADDLAKLEKELEAFGKAFDEQDEVGDPFVGLEVK
Ga0247723_100096839F023349N/AMKHVLYEVTDDFDIIIKLTFENYSYLNAFIEQHTADKKYEPKFLVLELNDEGDIDFIRTYNGIKETSKKYVVDFID
Ga0247723_10009684F057375GAGGMAETVYFVNASDVFEAIELGDFEQAQFLDQFTYGDSLTDLTLIKKQTFVNRLVKFIADCEDVYEKDVVMQNLKEYNFGLLDCIKHVNIEE
Ga0247723_10009685F039133AGGAMNTTDKVIVRFKSRVPKMLYTAHYNGLLLGSSPNAQDLGEYYACKYNTEWILQDGNNFYTQRGVNK
Ga0247723_10009686F015472AGGAGMAHYYLNNGGTRWVTDSKIQVVGIHNGKRYNKMRKPMFWEQLGNFAVCYVRVADNVYRGFTEDNNGVIELRLDKCYRVR
Ga0247723_10009687F033432N/AMAEERWHKFESQACIPSCKGWNAWAPLCECGRNYCTFKPSGNIEEMQMVIEARPLDF

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