Scaffold Ga0247723_1000968

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000968
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17584
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (66.67%)
• Novel Protein Genes: 19
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Associated Families: 19

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004583	Metagenome / Metatranscriptome	432	Y
F007310	Metagenome	353	Y
F008552	Metagenome	331	Y
F009750	Metagenome	313	Y
F011390	Metagenome	291	Y
F013084	Metagenome	274	Y
F013087	Metagenome	274	Y
F015472	Metagenome	254	Y
F018927	Metagenome	232	Y
F023349	Metagenome	210	N
F027516	Metagenome	194	Y
F033432	Metagenome	177	Y
F033803	Metagenome	176	N
F039133	Metagenome	164	N
F040618	Metagenome	161	N
F043399	Metagenome	156	N
F048994	Metagenome	147	N
F057375	Metagenome	136	N
F076096	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100096811	F004583	AGGAG	MKYVRNSDRLREILVSTRHQIVSLKDIQIDLLRSNPKASTEIATQISALEEVYKHQLSLVEMTESTEPKSRGWFSGQIKSKEDRLANIMD
Ga0247723_100096812	F076096	AGG	MICYNPEWENPLYWFDKLLTYSDHAELRSFERDLPLIDFLPINSKFLYRTMKTDVYSMTFETTVNHKKIHIAINSIGKVMTVFPVVVTKADRFQYKYKQYLGAFKQPEDYLPPVITSLDFQEVDYEYLEGVA
Ga0247723_100096813	F048994	AGGAG	MIGIVKIEFGFMNLYVNGVCVVSTSTIAGIRHAVKRYNLQGYLMTAE
Ga0247723_100096816	F007310	N/A	MRTVLWNNTERWFNHHHYELLIEDITGFDLQQSLCAESVKYMAKRLKDTPYNRTFRSKYSIYSDEYNALVEKFNDQANNNGKIEVA
Ga0247723_100096817	F013084	N/A	MGIMSILGLMEETKNAVLHRGHNVKNWLVLGNDCYALECADCKKTVMIKEHPLPNEIKVSGEALATNCVKPVKEKKLRKK
Ga0247723_100096818	F018927	AGG	MNKHIEITRHLTVDGKTTFYVVEKSKNSSSIIWNGTCKQAAYQVAYRNARKENTPLYDTLYKAEIDRNGVKHIIPIGNELLEVNN
Ga0247723_100096819	F043399	AGGA	MKIPPSSIMLLDDYPIVIWTIVKKNNNYILLDSCGIEVFRRKENRKKEIYQYCEDNGIDFQEEF
Ga0247723_10009682	F011390	AGGA	MEIKTTNYGVCKVKKHKYQTNGNLALSLVDETGQPVVYITTNIFPMAEDEFCANYYNMGATLWNDIVTSGLFEMTGEKVPSGYCEYPVCKLVKELA
Ga0247723_100096821	F040618	N/A	MENTTTVRMSMVVNVKDVSDKSSCIGFVGQGTWFDGKSFIVTQYKANPTCWYFFVYDVFAPEENYFDGVNSFGNEIWHLNPDNGEMCGKTYLYSPMTDRLYVPYGISQPTKEKSPSFLFVIE
Ga0247723_100096822	F009750	GAG	MKEIITAIYQNGKFKDNKILKPHLTDRIGIRMTFPEGAECILWTNGKKYYAVCEAFGTIFTINIPRNLGDDIWERFKTEFEGNYSYNSF
Ga0247723_100096824	F013087	N/A	MEPTVWIYFSKTGTGYELKGSDVISGFDAFINSDGTYMVEYAFSDIKNSMHFFIYEWDNSQKKRRTIFEGYQRQNILVNFAKNVNVCHLVRQAIYQEYLMDNDEEELENANS
Ga0247723_100096825	F008552	N/A	MIISFEASANVDTTLFGYFSMEYDPEFFSDIKENLTEISKDSLISFKLDPEDIKLLQGKFENVKRVINISDVEQNKFTNVFKRKFDSSGFKTFKYVKLHIDKDYFYFTGHHENKDGTKPVEFQSLNFDARFIDSLEKKYKENVVN
Ga0247723_100096828	F033803	N/A	MTINLRKNIARFIYILDQTTNKDSRAKVLKELDLTEAEFTELVGALLDFSNSKDKEWYCCNPEYHAFIETFKIISEDNDYELLI
Ga0247723_10009683	F027516	GGA	MTYQDYIIKCEVAKTVFQCGVKSSLIVENATPEQRLAWIADDLAKLEKELEAFGKAFDEQDEVGDPFVGLEVK
Ga0247723_100096839	F023349	N/A	MKHVLYEVTDDFDIIIKLTFENYSYLNAFIEQHTADKKYEPKFLVLELNDEGDIDFIRTYNGIKETSKKYVVDFID
Ga0247723_10009684	F057375	GAGG	MAETVYFVNASDVFEAIELGDFEQAQFLDQFTYGDSLTDLTLIKKQTFVNRLVKFIADCEDVYEKDVVMQNLKEYNFGLLDCIKHVNIEE
Ga0247723_10009685	F039133	AGGA	MNTTDKVIVRFKSRVPKMLYTAHYNGLLLGSSPNAQDLGEYYACKYNTEWILQDGNNFYTQRGVNK
Ga0247723_10009686	F015472	AGGAG	MAHYYLNNGGTRWVTDSKIQVVGIHNGKRYNKMRKPMFWEQLGNFAVCYVRVADNVYRGFTEDNNGVIELRLDKCYRVR
Ga0247723_10009687	F033432	N/A	MAEERWHKFESQACIPSCKGWNAWAPLCECGRNYCTFKPSGNIEEMQMVIEARPLDF