Scaffold Ga0247723_1000953

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000953
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17709
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (38.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006590	Metagenome / Metatranscriptome	369	N
F008815	Metagenome / Metatranscriptome	327	Y
F025030	Metagenome / Metatranscriptome	203	Y
F101173	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100095311	F025030	N/A	MKLRLLKEWNGKEPGKVGVFLSEYGEQMIKDGIAELLDEDFVVEQMPIKEEQQQDPVYIPIPVPMSYFNDEGKEENITKPKNK
Ga0247723_100095313	F006590	N/A	MKTIKIANADIPIKFGMFVLGTFLRERKLKLSDLSQLGEDLLLALELAFAGVQQGYKAKGEKCPYDLQSFCDLVDTDMGGITRIMEMISNEISPPEDESEKNVVAKVESSHLNTSNAFVSEF
Ga0247723_100095316	F101173	AGTAG	MAVRYQTTVYNEKSRKITVSIKDANYTGSVGTFDTLSLGIQYDSESQQGAERFTPIIGSRCSLSLLINSNDLQALLLDIGLAIEGRFTMQLTAYEDDNTTISFRWYGYIVTDLVEFEDVPLSLGYQAQISAIDGLGWLKTLDYKSAVGPYNGQDTVVQHILNCLNQLDFVQENLVANNLPVLHTVFNWHENTTAYNAANDYALLSVIQHRAFYHKDTKANYIYQSCYDVLKKICQTFGARLIFSGNQYWFIQVNEYSRTPESHRYFKYSGFGVQSVGTFTEDFTISNIQNNLPTSDLLRLSGGKWTYYPALKNVVIRYNHFAKQNLLAGVEYNYANNATPITTITPTLDSTNADARLSYTGILGFYAQALNPVNFQPYQFVFAVKVASIINSFPLQGFESANWTIGSGWLIDNKILSGVLVTTEAFYTTFSVVSGRKYYVKIKVDVDNAGALRLRLGGLTKTITESGDYEYVIVATNTDTLKFDSVSSPRFTGKIKSLEVKQENKYLNRNVNYTSGFNFQLEPASWESTFSEFEFNTETINNDAAFIAYKTITFDTLNIPDTAEYIWEMRLKEMRNEAGTNIISNFAVSYLLSNNYLEFLPSGATTGQSDILEYGSDNDDKSSTIFSLDTYIGDGPSKTTDGGLKVLESGTYQNSSSWDVGNGSGFNNVTQLLVNEVIRGQLTPKLRMVDMPFQNLVVDKPYLPHKVIEYSSGYYVFERGSFDLKTEIWQGDYFKIELDA
Ga0247723_100095317	F008815	N/A	MPNYTERTVLSKPRDFAEVANNAGSGGVVNNNVTETINNVTVTGSAVSIFNQEFLNTTSNILTWTQNGGILPKTNLAASIHVYQNGQKLIESQYVITAPDTITIDSNSHYDGSNYIVFAININ