Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1000870 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19005 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (22.22%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002843 | Metagenome / Metatranscriptome | 526 | Y |
F005633 | Metagenome / Metatranscriptome | 394 | Y |
F007260 | Metagenome / Metatranscriptome | 354 | N |
F009147 | Metagenome / Metatranscriptome | 322 | N |
F010835 | Metagenome / Metatranscriptome | 298 | N |
F028809 | Metagenome | 190 | N |
F050365 | Metagenome / Metatranscriptome | 145 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247723_100087011 | F007260 | N/A | MGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDASVWSCDVGSNGDRLLQESGSLLLQENTDRLLLTFGKMIPVVGRLLTYDGRQMRIMSAKRDGSGAYYALELGSKTK |
Ga0247723_100087016 | F002843 | N/A | MIVPVNIVAVQVNANNSLFVTTGVDYDNSGSIVGSEITSQYTLNPGDSLEGQPTEVVNIANALWTPAVVEAYKLANPVVEAVQPNE |
Ga0247723_100087020 | F009147 | N/A | MAVQADISTEYSMGREGFALVTSTAAQTGNWAGLIPTEPTVFTSITGFGISGTWTSKTIPAGFPLVGNITGFQILSGSVVAFLARS |
Ga0247723_100087021 | F005633 | N/A | MRIATTIAVDKTGKTKLLAGPEIDATLQRTNFNTVSVPEGGKLILWIQGALAPKIRKG |
Ga0247723_100087026 | F028809 | GGA | VEILNCQKPAGIESLRQNRIAIKAIERQTGLEFLSISDQEPSRIDGFIFDPAKGIITGIYEVKTRSYGLHKLQTTFGNEWMISWSKIQAALEVTRRTKLPFYGVLHLLDDNIVMMVEIFNRNASWAANHKVEDRLVNGIKDRMALINMATAMQYKMNQLF |
Ga0247723_100087027 | F050365 | N/A | MPLTSPEEADAWRGSRKGIGGRPSTLQRMAAIQQQPAPELAGGPYRPPEASAAINAALATEDSPQGAYERQKKIERAAYDLAVEALQSRSLDAGRMVSVHATAAKNLISSRDDVLAQSEKERTLVSGAWVKKAMQEHDGAVSQLLKSMPKQLSGRIAPHDPEHAERELERWVQEVCLKTLHQTDPWKS |
Ga0247723_10008709 | F010835 | AGGA | MNAVALRTERALVDWLAAEDWSESPIGTPTCLTSYGHGAFADPDLEDQMPSFPRIVVRASTAVPVHPLDRTCEVDITATLQLSADDTSEPQALAIVQIFENLLQYLYVDGNIAELDALDTNPSGGFNAQFAVPVDFGINDISERARTFSRSMTIFAAANEQ |
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