NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000870

Scaffold Ga0247723_1000870


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000870 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19005
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (22.22%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002843Metagenome / Metatranscriptome526Y
F005633Metagenome / Metatranscriptome394Y
F007260Metagenome / Metatranscriptome354N
F009147Metagenome / Metatranscriptome322N
F010835Metagenome / Metatranscriptome298N
F028809Metagenome190N
F050365Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100087011F007260N/AMGNPSFLWQGVLVRCLPAAITDANSVISGGFQDNVQARVLVKFSDWRLADSTLVTVDASVWSCDVGSNGDRLLQESGSLLLQENTDRLLLTFGKMIPVVGRLLTYDGRQMRIMSAKRDGSGAYYALELGSKTK
Ga0247723_100087016F002843N/AMIVPVNIVAVQVNANNSLFVTTGVDYDNSGSIVGSEITSQYTLNPGDSLEGQPTEVVNIANALWTPAVVEAYKLANPVVEAVQPNE
Ga0247723_100087020F009147N/AMAVQADISTEYSMGREGFALVTSTAAQTGNWAGLIPTEPTVFTSITGFGISGTWTSKTIPAGFPLVGNITGFQILSGSVVAFLARS
Ga0247723_100087021F005633N/AMRIATTIAVDKTGKTKLLAGPEIDATLQRTNFNTVSVPEGGKLILWIQGALAPKIRKG
Ga0247723_100087026F028809GGAVEILNCQKPAGIESLRQNRIAIKAIERQTGLEFLSISDQEPSRIDGFIFDPAKGIITGIYEVKTRSYGLHKLQTTFGNEWMISWSKIQAALEVTRRTKLPFYGVLHLLDDNIVMMVEIFNRNASWAANHKVEDRLVNGIKDRMALINMATAMQYKMNQLF
Ga0247723_100087027F050365N/AMPLTSPEEADAWRGSRKGIGGRPSTLQRMAAIQQQPAPELAGGPYRPPEASAAINAALATEDSPQGAYERQKKIERAAYDLAVEALQSRSLDAGRMVSVHATAAKNLISSRDDVLAQSEKERTLVSGAWVKKAMQEHDGAVSQLLKSMPKQLSGRIAPHDPEHAERELERWVQEVCLKTLHQTDPWKS
Ga0247723_10008709F010835AGGAMNAVALRTERALVDWLAAEDWSESPIGTPTCLTSYGHGAFADPDLEDQMPSFPRIVVRASTAVPVHPLDRTCEVDITATLQLSADDTSEPQALAIVQIFENLLQYLYVDGNIAELDALDTNPSGGFNAQFAVPVDFGINDISERARTFSRSMTIFAAANEQ

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