Scaffold Ga0247723_1000861

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000861
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19084
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (74.29%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001259	Metagenome / Metatranscriptome	735	Y
F005740	Metagenome / Metatranscriptome	391	N
F006135	Metagenome / Metatranscriptome	380	N
F007361	Metagenome / Metatranscriptome	352	N
F012111	Metagenome	283	N
F013755	Metagenome / Metatranscriptome	268	Y
F048938	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10008612	F012111	AGG	MSERAPRRYTDGSVTFEGGVDSGVMPSEVDKNQVAFAVNASFRQSFVSPRPGFIQKDYETCLSITADNTLVTADQTNVTADGYSEECYSSSGLTGVFQCALPYIGDNGSTFILMLISGKVWLYDCLQNSVQNLSASPNLENPSNILDGWMVQAENFVVIQDGQSAPLIFNGSNLRRATIDEIKCGRVMAYVNGRIWYALANGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGNPDTSLGQGPLLIFTPRYVFSINAPVDRDVWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFNDWGNTPISNEVLNIIDNDQADLLWASSAVVFDNRLLMTSQPRYNAEGVVHKSLVVLDFDLITSLRKKFPPAWAGIWTGLDVLQVLKTENAYGDRCFSIARGLDGTIQIWEISKTEKFDNNLSAGKKEIQWLVQTRAYNFELPFGLKRLDSGDIFIDSLDGDVSFNIEYRPDQYPGWIEWADWTECAATLQCQPVCPLSNFQPQYRPKMRLPTPSDIPCNSSISTPTRNMYEVQMSLTITGYCRIKSIRVHAYDVQEPAVGECLVFEGCKTLEGCDVNPFLYTSE
Ga0247723_100086123	F006135	N/A	MSTHIKIENQTEVPILVALFEQPKCNDHPTRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWRFPGIAEVVAPLELGFKLWHQGDIDWANVKAMSSDDLNATFGSTYTSAKSSTKSWNGMSSCIFHIRGGPSWVEETEQVGIYRPKTVAYNGVQSTPMKSE
Ga0247723_100086124	F001259	AGGAG	MKDSPAFVYVHAWNGTIRVESLDTARNIDGNPEWKHVATINPHVVLESILRAKGKERNLIIKHLLT
Ga0247723_100086126	F013755	AGGAGG	VSTSPRSDSTPHNVADLAMLCRRLERKLAATRKYLSEVTERAKKLEVENDALRADLLLWNEQEVK
Ga0247723_100086134	F048938	AGGA	MTREQTKEAIKVMQAFVDGKEVEAFSPCQKWERATTPRWGWDDTQYRIKPTATLRPWTADEVPLGAQARIREHPKTRWLIDRTSSEENRNDWCKNYEHSTDGGKTWLPCGVVEEAK
Ga0247723_10008614	F005740	GAG	MKLIVQDIRSTIARVIGTCVDDQRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRQIETIESVADCCGVGTVRNQWFEFQESGYGLLGGENGACVGKQLVDRGTVVSYRDMSGGINSYLRVYPGDASDVGKTITLQGVDQNGNWIRTQSGGVWIDGEKLTLALPYVQSTKKFISLSGVIRDATNTASRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCNNDEDKPVTVMAKMRHINATSVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF
Ga0247723_10008616	F007361	GGA	MSVLFSLENDCIGLHEQGATDPDWKKSIEKYRMRYKYVADCSTYGYLPKAVVHDSIKVYVKKDAESSAKECTERFGYEVHLPSVQMLREYADQWASLHGVMTIKEGELFKVDTLRDVWVHCFHNERAFPEEKAARLITMNIQRHEPEKVFSIENGNRLVKEVF