Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1000765 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 20596 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 33 (80.49%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F008296 | Metagenome | 335 | Y |
F010612 | Metagenome | 301 | Y |
F015719 | Metagenome / Metatranscriptome | 252 | Y |
F022871 | Metagenome | 212 | Y |
F038155 | Metagenome | 166 | Y |
F046331 | Metagenome / Metatranscriptome | 151 | N |
F051888 | Metagenome / Metatranscriptome | 143 | Y |
F067677 | Metagenome / Metatranscriptome | 125 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247723_100076513 | F015719 | AGGAG | MTMYYTEVDGAEPTVSTQVGGIKYTFTNESLTKLIEEKEHLKIELAQVERKFKSAQFDVRELFQSNYDTDQTEILCDVDDVNNLLINIGAEALTKSWSATVTITATVTGIEAPNKDTAEDIIRDNIELSLTTDGDIWLDDVSMNSAYPEA |
Ga0247723_100076515 | F046331 | N/A | MERPKRSFLFIRTGEQIVSHSEAPISITIKTASGSLVTVRASSGEELDAVVATGLAAITSATTELEQAIRGTVPTPMTVGAIASALGASISPMDNSTASLSGRNCPHGHMTAIQGTGKDGSTYRGYFCAAPKGAFDKCKNVYLKTTDAAWSTFVAEQVK |
Ga0247723_10007652 | F067677 | AGGAG | MNTFSFESARVNKVWDNKNRFNLGIQDSRAVAQPDGSFKSVFVASRIVTTSDPDHLEFIRKNLVDSDDCVVNIRGYMETKAGKKPGTWYDNMVITELTLA |
Ga0247723_100076520 | F022871 | AGGAG | MSESENVWESDEELWDFIGENKRLVGLQISNGQGLDILNALRDIYLTIDDDPKSAMKMLSLLATVIYASSIGEGQQFTDEIQVAAAMEQFDSSMKDIFNEESK |
Ga0247723_100076522 | F008296 | AGG | MTDAWVDEYKLLVSTLASEYYRKYPVTEAEDIRQVLWVWFLTHPVKYTEWSKLPPKDKERLIARSLRNAALKYCEQEKARKVGYDISDLYYYDPSVIEAFLPSIIDNTYEIPSKIKDLNFKFGKSGEVTDGNNWLVLRSDIEKAFNRLAEAKQNILRIRFSVENYEWSDLGKELNTSADGARMKVNRALSSLIKILGGWRTHSDLDVIETKEEVEEHE |
Ga0247723_10007653 | F051888 | N/A | MTSFALSSSTQSFSCSHENPATQLDTRDEYCAECNLLQEGSSVEHALNFQEINRSEQESEPAQSSDIPDEKGFNHQWTNRDGEYLEGVYDITNRLPSWLYLGKHVFPMFKQDELNAYLALPSTDTICMVCHLQVNRFVGCQQCITPSQSLYNEIRRVMLL |
Ga0247723_10007654 | F038155 | GGAG | MASNDRKNGKAYKKKPKVQKKTGKTIGGYSPAKLAIRAKKRGM |
Ga0247723_10007656 | F010612 | AGGAG | MLNEDIPVWEHTVWILAKVRCRTTHINIDTAGDEALDDPSEWHVLEFDKGVKHSQEIVRV |
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