NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000693

Scaffold Ga0247723_1000693


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000693 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21907
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (17.95%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001775Metagenome / Metatranscriptome636Y
F008081Metagenome / Metatranscriptome339Y
F034147Metagenome / Metatranscriptome175Y
F059884Metagenome / Metatranscriptome133Y
F065767Metagenome127N
F088879Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100069314F008081N/AVLSNDSLNKMEEAQVLNPFGYLSATKVLDENRKPSEWWIEYLEFNEIVAENEFYVLFSDGLLVKKGRSKFRTSQYLKSEKFKSFKEFLTQCDN
Ga0247723_100069322F001775N/AMKEVLDDERIRIAIISFLIGVLLTFVIYPKPDQETVYKYETVTKTDTLIVEVKDTVYVPKKWIKSQIIRDTVLIDFKPQISHFKTTLPFEYGNTYVSGEVLGEVLKMTATNDYKIPVVTNTITETKTETIVKKAKGIYLGAGVNSLIQPSASVSYLDNKYLFSYQYQPLEKVHQIGVAKKLF
Ga0247723_100069334F059884GAGMLLVGRTKVPYEQLFSLSIKEINALIKGHETDYKDLIESLRVHALIGLQPHLKKGANLSPSKIWPLPWDYIPKPLESTAEDFAKAKKLLEIASKLERNVKSKNRS
Ga0247723_100069335F034147N/AMAKYHSAPFKEGEIFFYPNLGALANFEDFTQQGIAEAFSGKSIPKLDLIYVLLLECHKVACIRKSIKPVEIHELKTWIDGKDVMNIFNDVLADLLIELGIENPTEEKKR
Ga0247723_100069337F088879N/AMREIATDIRKAVIAAISPLTLSGVTLPIYDTELPPGINPAVYQGSAAYVLITDQNETETTNNDCTIRQNATFQINIVTKFAQGNGGKKLSENISNAIQLKMNLTDIVLPIDLQAINIRKNFSRVQIEQGSSQIAYQKILSYTLDIFFVS
Ga0247723_10006935F065767N/AMTSLNQQQKDEIVRLYKLKVMNKNIATILNISRHIVNNYIYKDYLLTNERAKNTCAYMKDADQVIELYVKGLPYKEIMSMTGVKYHHLCEIIKLTPKRRIDPLSIKLVRQIESMVEENWRTCDIAKEMNLDYNRVSHWVRKARKEGVH
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