NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000648

Scaffold Ga0247723_1000648


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000648 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22863
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (87.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001599Metagenome / Metatranscriptome665Y
F003539Metagenome / Metatranscriptome480Y
F003658Metagenome474Y
F014237Metagenome264Y
F031484Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100064812F001599AGCAGGMNDKLAIAWCDNGMVDGKFMQGVTDVMLHSGVEVVTTLRSQGNQIARQRDKVINHWYEGNKADWILWVDSDVVISVNTFKLLWDNKDVIERPILTGVYFTTDQPEESLMTPMPTLFNFVESNGTVGITRIHPLPKNKLMPVGAAGMGYVLMHRSIVDRIRAVLPDAPLFSDIGHGKNFMGEDIYFFALCDKADVPVYAHTGATVPHMKRFSFDEHYYDAFVGQKRK
Ga0247723_100064826F014237GAGGMETFKNVMLRIVAVIAAESLGVIGAGSLVGIEVWQAAVLAGALGAATVIEALARFFLADGSLTAEEINQAFAKVDKKAAE
Ga0247723_100064828F031484AGGAGGMNTDKLVAIATTYARAAVPTVVALYASGVTDPKALVYAFLSAFIAPIWKALDPKAKEFGRGSK
Ga0247723_100064832F003658GAGGVNDLRGEPAFACICGCKMFEVTVMWDEGTRAVGWYDLTQKCKECGTLTTAPTEIDGCED
Ga0247723_100064833F003539GAGGMNYISEYNELVQTLATEYARRYNMLERDDIAQELWVWFVSHPRKYKEWSDLEQKDKDKLIAKSLRNAALKFCEREKSKKIGYDMSDLYYYDASVVEAFLPSIISETYVIPVKIQDLNSKFGSGDLSDGNNWLSLRSDIASGYYKLSEAKQNILRLRFSVEQPDWATLAKEMDSTPDGARMKVQRALNSLIKHLGGWKPQTDEDVVSE
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