NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000579

Scaffold Ga0247723_1000579


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000579 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24423
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (17.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004112Metagenome / Metatranscriptome452Y
F010155Metagenome / Metatranscriptome307Y
F011844Metagenome / Metatranscriptome286Y
F073468Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100057919F073468N/AMKQMMENVKTSLFGAVAGLPMIWEGALAQDWKMVLAGIGMLLVGIFAQDAKK
Ga0247723_100057923F004112AGGMLKGYNEKKVDSYKQTRLLMFTMVRLMGDPKSAPKTPEALWELPGDIMSKPTDEEYREVFNRLTKWQKTDQ
Ga0247723_100057925F011844N/AMAQVLGSLQNIEIDITNVGTTGFKNLVCLRTSSVNTTMDATTEQTNCGVLTSVAEPLMSLDFDAICEVSPSASQISYEDLLTCVKNKTIVMVRVQNPTVTGSSEGAAYYHRFSGYITDLTWNQSTTEFINFSGTIQSTGSLDVDPA
Ga0247723_100057926F010155GAGMIDCANNVRVIYVNALNGNLSYNGKDVPVYGQTPFDTTPQNYVVIGNINEVSDNTNHSFGNNVEVVVDIFSEQYRVNDLGVVDNIASQILNILIPDTQVDGFDDTYFEVFPIGRSSSRYLPLQDGDNYVARKIITINNLVNQK
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