Scaffold Ga0247723_1000574

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000574
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24717
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (10.81%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001640	Metagenome / Metatranscriptome	659	Y
F002778	Metagenome / Metatranscriptome	530	N
F004839	Metagenome / Metatranscriptome	421	N
F006590	Metagenome / Metatranscriptome	369	N
F010541	Metagenome / Metatranscriptome	302	Y
F025030	Metagenome / Metatranscriptome	203	Y
F064723	Metagenome / Metatranscriptome	128	N
F101173	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100057410	F025030	N/A	MKLRLLKEWNGKQPGNTGVFLSEYGEQMIKDGIAELLDDDFVVEDMPKKEEVKQDPVYIPIPVPAEYFQNEEEENITKPKNK
Ga0247723_100057412	F006590	N/A	MKTIKIANADIPIKFGMFVLGTFLRERNLKLSDLSLLGEDLLLALELAFAGVQQGYKSKGEKCPYDLQSFCDLVDTDMGGIARIMEMISNEISPPEDESQKNVVAKAENSPLNTSNAFVSEF
Ga0247723_100057415	F101173	GAG	MAVRYQTTVYNEKGRKITISIKDTVFSGSVGTFDTINVQLQYDSESSQGMERFAPIIGSRLRLNLIINTEQLQTLLNDIGFAVEGRFSMELTSYEDDNTTVLFKWYGYIVTDLVEFEDVTTDIGFIAQIEAVDGLAYLKTLLYKSEVGPYLGQDTIVQHICNCLNQLDFVQENLVANNLPILHTVFNWHENSINYSADNDFSLRTVINHRAFYHRDTKNNYTYQSCYDVLKKICQTFGARLLFSGNQYWFIQVNEYLNPSNHRYFKYNGFGIQSSGTFNLDFRILNLQTDLANSQLMRLSGGRWSYYPPLKNVVIRYNYFGKQNLLAGKEYSYATNATPEQVITPTLDSTNVEARLSYTGILNFYASALTPANFEPYQFVFAIKLASIVNSFPLQGFTSANWTLGSGWLIDNAILEGTLVATEAYYTSFSVTANRKYYVNIKVKLENTGELRLRLGGVTKTITETGDYEYIIESTNTDTLKLDSISTPKFTGKITSLQVKQENKYLKRNVVYTSGFNFQLDAASWETTAAEYEFNVETVFSDNAFVVNKTISFDTLDIPDTAEYVWSMRLKEMRNEAGTNIISNYALSYTIMNNYLEFLPDGTIGGQADIQEYGSDNDEKSSVIFDLDTYLGDGISATTNGALKVKEDSGAFKLSNTWDVANGQGFNKVTQLLVNEVIKGQLRPLPRMIDMPFQNLSIDNVYLPHKVIEYSGGYYIFERGLFDLNTDIWRGDFFKIDDHA
Ga0247723_100057419	F001640	N/A	MRYLFLFLPLFSFAQDVVKDTVYIQKQGNIYYIIQQTTLSDSTVTGSKQILGDSATAIQSLVTDAERQSNTIAIHAKPIITKGKAVQRINYYNDLHQQISNKPVYFTTAQRDTAKFLGDWRLNFNGEIIDGVIELNVNKRLIFNPDNGKVYTISTNLLLATFTNQISFTFNSVKYDLYKYADGKFATVDGNVRLIKIE
Ga0247723_100057427	F004839	N/A	MEKNFTNTQFKWTFESISDNIPTIMLITILLTYGINAYLTAIFLPLDFWLAIIAASILQLGRFAVVFMDFLNPTKGRSTYPPKIALGATIVALIEIFFGLQEHYEGGEYITMFLFVGTIIVFGYLLEINFVDKGVEAYGINEPKIIKRRRRKIIVKNANEEMPKNFKRNITSFQLSLF
Ga0247723_100057429	F010541	N/A	MEKQIYTVMYFGNAKRYQDLCEEVAAYSNRHAVEKVYAKMRNEDYFPDDFFLWGGLVKDCDGNVIADKSDETIEYDGGYFYAELKIVE
Ga0247723_100057436	F002778	N/A	MKEYNSKMLEIKAFCEEVNTWISVAPSAEDLDSCDEYLRQLSAYYSRYTVISGMNESIYSYLMMSCIRDMPEEEYKRVKHSSTLTDFYVKGKYPKATAIFEQCRAVKQLLLTTSELYRTLLSSFRQERILVSHMTT
Ga0247723_10005748	F064723	N/A	MFISQSKLNNLRKLQAQTQKKLTKKGVLFAIYNIAEAVVELDNLMKNITVEKRKEIQKAAEPIALATYRSFVPVSKKPHYYYIKGQGLMYGISPGNLRRSIKIISDVKNLEKSQTSLIGPLYQVQGRGAKLDSEMTTDGFYAHMVYGNTRGWVKKVKNKAERAASMAVIQKMSQEAIRVAKEYPRKFWEI