Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1000531 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 25974 |
Total Scaffold Genes | 41 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (12.20%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001883 | Metagenome / Metatranscriptome | 622 | Y |
F004366 | Metagenome / Metatranscriptome | 441 | Y |
F010620 | Metagenome | 301 | Y |
F010918 | Metagenome / Metatranscriptome | 297 | Y |
F016965 | Metagenome / Metatranscriptome | 243 | Y |
F061550 | Metagenome | 131 | Y |
F094950 | Metagenome | 105 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247723_100053113 | F061550 | N/A | MELQILKSRVILHKTLLKLKASREEIEEKNAHRTDLINSMLETESELSEVLTTFLILEKQAREHSQSSHRLERINLDLKSEMKQLENELKVNNF |
Ga0247723_100053117 | F010918 | N/A | MKRYKVTYNYFESGKKRIAIRILQALDREHAIMQMAMWPQLILKVEKL |
Ga0247723_100053124 | F010620 | N/A | MKKLLAFLSVLTLFSCSSERLAQYHYKKALKHGLKLVQDSDTIRITTVDSIPVMVNDTIIWEKVITTKDSVIFFNNIYVPKTRWQTRIEYKYKTQILKQDVLKYKYIYKEAKIQKAKTNWRLFFIGFICGVALFFILRLIDKLYNPFK |
Ga0247723_100053133 | F094950 | N/A | MVTILGRDIPNRIEELTIEQFESITDINNNKEIDPVDRHLQIFEYLGIPEKEFFDFDIADFIDIVKEFNTVPEAMGDIEPVGVLELDGFTYTAELKLTVRETKLIEKIAIHKQKGYISDMMAVMFKADHLTTAEHYSEAHLKLKSKHIRKLKAEICIPYIMFVANKIKKQIENVPTEAVE |
Ga0247723_100053135 | F001883 | GAG | MGRYANTGEFNVLYPTRRRMATILKRIIRDDILNPTGSTLIDSIRINAKITGGFEILEIQIVAAYYFIYLNNGVPQTANQYGKNGGSIVPRDFVEKFTYELGSAGITKEIYDQYVEWLTKRYKILDVAPILEKNQKLVYTFEALFAPPDFNQGYPLRV |
Ga0247723_100053136 | F016965 | N/A | MLNTFTYNGIEYTITGAIEVISDTQLHIETDNGIILVDDTMDIYKELTNG |
Ga0247723_100053138 | F004366 | AGCAG | MNSLQAITNHITAFYTAHKQVFKVGCDFKEQLYNFATQDEKYPLVYIVPSNVLPTENTTEFSFDIYCFDIIQKDRANIITILSDTQQILNDLYIYYMDSNDYSFDVVGVPTFAPLNNDLLDYAAGWQMSITLTVNDWTDCAVPI |
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