NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000531

Scaffold Ga0247723_1000531


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000531 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25974
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (12.20%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001883Metagenome / Metatranscriptome622Y
F004366Metagenome / Metatranscriptome441Y
F010620Metagenome301Y
F010918Metagenome / Metatranscriptome297Y
F016965Metagenome / Metatranscriptome243Y
F061550Metagenome131Y
F094950Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100053113F061550N/AMELQILKSRVILHKTLLKLKASREEIEEKNAHRTDLINSMLETESELSEVLTTFLILEKQAREHSQSSHRLERINLDLKSEMKQLENELKVNNF
Ga0247723_100053117F010918N/AMKRYKVTYNYFESGKKRIAIRILQALDREHAIMQMAMWPQLILKVEKL
Ga0247723_100053124F010620N/AMKKLLAFLSVLTLFSCSSERLAQYHYKKALKHGLKLVQDSDTIRITTVDSIPVMVNDTIIWEKVITTKDSVIFFNNIYVPKTRWQTRIEYKYKTQILKQDVLKYKYIYKEAKIQKAKTNWRLFFIGFICGVALFFILRLIDKLYNPFK
Ga0247723_100053133F094950N/AMVTILGRDIPNRIEELTIEQFESITDINNNKEIDPVDRHLQIFEYLGIPEKEFFDFDIADFIDIVKEFNTVPEAMGDIEPVGVLELDGFTYTAELKLTVRETKLIEKIAIHKQKGYISDMMAVMFKADHLTTAEHYSEAHLKLKSKHIRKLKAEICIPYIMFVANKIKKQIENVPTEAVE
Ga0247723_100053135F001883GAGMGRYANTGEFNVLYPTRRRMATILKRIIRDDILNPTGSTLIDSIRINAKITGGFEILEIQIVAAYYFIYLNNGVPQTANQYGKNGGSIVPRDFVEKFTYELGSAGITKEIYDQYVEWLTKRYKILDVAPILEKNQKLVYTFEALFAPPDFNQGYPLRV
Ga0247723_100053136F016965N/AMLNTFTYNGIEYTITGAIEVISDTQLHIETDNGIILVDDTMDIYKELTNG
Ga0247723_100053138F004366AGCAGMNSLQAITNHITAFYTAHKQVFKVGCDFKEQLYNFATQDEKYPLVYIVPSNVLPTENTTEFSFDIYCFDIIQKDRANIITILSDTQQILNDLYIYYMDSNDYSFDVVGVPTFAPLNNDLLDYAAGWQMSITLTVNDWTDCAVPI

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