NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000518

Scaffold Ga0247723_1000518


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000518 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26365
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (80.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F018164Metagenome / Metatranscriptome236Y
F036663Metagenome / Metatranscriptome169N
F053803Metagenome140N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100051814F000368AGGAGMNAKFQAAVLSWFRAAVSAAVALYLVGETDLKTLGMAALTGFLGPVLKWLDSSAPEYGRGAE
Ga0247723_100051822F018164AGGMAKIFRGPTYKYRPGREYDLWFVSYPIGKSVIKINGVWKTMVVPQDSDLATYDRVLRGGYDNVITDAEASELTAAGYGDYVFNV
Ga0247723_10005183F053803AGGAMAVDVELTLDEILDALRFIHLVRENKKQYEVVDKKFDKNNSSYSVNLMGQLGEMACGKGLGLQVDRTISPSGDNGHDLSTPLGKNIQVKTSTLDKLIFNAPELFVSDYAVLVQFFGDKQLPHVDSRFSILGWTTRELFLANHYKHDYGYGTRLVMDANQLQPIEVLINEVSRL
Ga0247723_10005189F036663N/AMIEKYIALVQPEERSPLVTRVRVALNVAGDDRLDAPLQELLKGLQHRYDIPAVGCINIATLDALAVAPPEW
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