Scaffold Ga0247723_1000482

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000482
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27561
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (88.57%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001396	Metagenome / Metatranscriptome	705	Y
F004761	Metagenome / Metatranscriptome	424	Y
F048959	Metagenome / Metatranscriptome	147	N
F058086	Metagenome	135	N
F066605	Metagenome	126	N
F069861	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100048214	F004761	AGG	MAITLTTLRSQVRDMADLDATDLSDSVIDQFAREGFQRIYALERRWPILQESYTFNTVAEQREYAISTIGDIREIISVVDTSTQGARLTLIDYNAAEEIWLGNLDVSSRPYFYSFWNKKIQLWAKPDIVYPMTVRAFRNPVYTWLDDVQEEIDLDEWFHALLPYFVLARVYQRQEDSDLANMYMKSFEEGVAFARRDLMKASSAQPVVMSGGKEYPTMKRWLQTLGRTL
Ga0247723_100048221	F069861	AGGAG	MKRQYTGNKDGAAKGLRPGMKVFIEEVIKLGDGAFWNNGDFGVRPMRGKEILSVHATGRAVDFSYRNMGKGKGVPNGRRHAVRMCKILVDNADLLGLEALFDYFPAPHGRAWMCDRDAWSNYKKETIHGAPKGDWLHAELSPEMADSPAKVREAFAKLVLPAEEQLKPA
Ga0247723_100048225	F058086	GGA	MKDNRWDIPATQQYNFKNDLQFGKKGEQITKDFLTAISTGSFEVKTDRYRNGRMVVETQQNPRDTGWKPSGVEVTLADWWVYVYALDGSLVVIKVERLKRYIQTLSEKRLKKFAPMSNNPTKGFLLLPEEVMDMITNPLYDTPGAEQ
Ga0247723_100048232	F048959	AGGAG	LSRKNEPTLDVTITLTELRAVVKSLSIGVDQLAKKINRLGDGPRADDVYNEYLWLMEAKKEFESVLIEALKGE
Ga0247723_10004825	F066605	N/A	MEEFRCLDCLSTFMSDELPRRGSYCFKCHIRGIKWGYTYGKEDFHGPTVVERQREQVRQAEAAGIKAEPVGTRWV
Ga0247723_10004826	F001396	GGTGG	VEPVWVPIVVAIIMGPIVVVLQRLRKENTDQHNEGRILLRVIGNKVDKIGSKIDNHIGWHDGIKDSVEKED