NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000425

Scaffold Ga0247723_1000425


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000425 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29252
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (58.14%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003049Metagenome510Y
F005584Metagenome395Y
F006138Metagenome / Metatranscriptome380Y
F008741Metagenome328Y
F008938Metagenome325Y
F009142Metagenome322Y
F011284Metagenome292N
F012113Metagenome / Metatranscriptome283Y
F014487Metagenome / Metatranscriptome262Y
F019290Metagenome230Y
F025739Metagenome / Metatranscriptome200Y
F090073Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_10004251F008938N/AEKWGIDAGQLSRMVKRGMPLTSESDAQRWRLANQKRVSKSQIARTPSQTSSEPLKDSDAESYKSKTSLGRLNRAKQAEVVAYSLVATAANNQNPVAMRAAVQGWGEAKKRVAEAEMEHARFEEVTRVLVRMDEVREVFGKWLGAIRNLMDAMPSSLAARANPSDPECAKRAIQEGIDQIFVTIQKAEGAFK
Ga0247723_100042513F003049AGGAMKNANKIIGCRKSKKGENTKGLGMITFGKSSIDKTKYVLVDITYDDKAGKELYEAGMLALKHDPEAVIEYAIKKALAGMAKCKK
Ga0247723_100042518F008741GAGMSVKTIKYSQRLGDVLRCLPAAKYLADQGHEVFFDCFEQYHGVFDLVSYVKAGSKGDVLDLEIWPNRYNDFIKSRKTWHDFVYSHPEIREADKTNIVLDKLDDKPAEGLPESYNLVAPFGISQTFYRNPLTLIQDAVKEFGKDNVFVLCPPDIRIQGLNTYTAKSFEQMAKAIRGADQFLAVNSSPIIIASAVRRGKESKFWGEKNEAEVQNVFHFEGLVRVD
Ga0247723_100042519F005584AGGTGGMAGSIPTSYFATDLSYMIEDLYQTVTGLGSSSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0247723_100042521F009142N/AMTNSVQINVEDALDNLLANIPNLNVYKTNRVGAKLFPFATISASVGDQLLGNYTGVYEVAVTIDYSDTAAKISQEAFDAEYCSIFEAFYSETPPLFTKIQNNIIDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSELDDGLRYLNFYQKQNSMYVAVI
Ga0247723_100042524F014487GAGMKLILLSFFLCSCSPKPEHNNILPRYSDMGAAEDAGKVK
Ga0247723_100042527F006138GAGGMPAVTVGNSGLVFGLSTETIGLVQSFSETRNVEKNEVRNASGDVTGVGYYNPTTAYSLSVAITGANTGLTVGGAFASLANATTVGTCRIDSIALNKTNTGFVTIDISATGYPNVS
Ga0247723_100042528F019290N/AMEGSSYWGTTNIKVASAVAAFGGTLRQADPVTHIVREDGSKQITFWFNSGGSGSIAKKEMEAKWSDMTSDQEAPIRYVRAALENRETLLGLVKRAEPIQIIKRGGQTLLVPVNAKPELKRAILRAM
Ga0247723_100042529F090073AGGMNNILDDELNSSFVKPGRDYKGEAIADYTEGSRLLMLQCKEPQDSSVYFVWAFLYIHILIAKNRKEAIKLAWNRDEFRDKLLGWIEDKTEEDRTVATNIVSEMIEEASRAKVSVVLSGNIASGND
Ga0247723_100042537F012113N/AMEQLLAFIQSQDVFAWVGALVALLSAVIAVASLIPGDEPENTLQKVVDFLSKFSRK
Ga0247723_100042538F025739AGGAMKKLLTNAVCEIQKWTLGFIAASLICGCATTRPYDIGEVPNQDSISDFIMRYDKLDRTKATPDEYRQLYGQTLKTISRLVEENERLRKRLDQ
Ga0247723_100042540F011284N/AMTSTQGVEKTPKHFTKKHELHLTTLQVAAVESMEKKYKRGVEEHGGTKLWEMPSVKLVENAIEEATDQLTYLLTLRSQMHIVLELARDGCTDETLTNPRARECCHLIYTTLTGQSKPPL

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