Scaffold Ga0247723_1000425

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000425
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29252
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (58.14%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005584	Metagenome	395	Y
F006138	Metagenome / Metatranscriptome	380	Y
F008741	Metagenome	328	Y
F008938	Metagenome	325	Y
F009142	Metagenome	322	Y
F011284	Metagenome	292	N
F012113	Metagenome / Metatranscriptome	283	Y
F014487	Metagenome / Metatranscriptome	262	Y
F019290	Metagenome	230	Y
F025739	Metagenome / Metatranscriptome	200	Y
F090073	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_10004251	F008938	N/A	EKWGIDAGQLSRMVKRGMPLTSESDAQRWRLANQKRVSKSQIARTPSQTSSEPLKDSDAESYKSKTSLGRLNRAKQAEVVAYSLVATAANNQNPVAMRAAVQGWGEAKKRVAEAEMEHARFEEVTRVLVRMDEVREVFGKWLGAIRNLMDAMPSSLAARANPSDPECAKRAIQEGIDQIFVTIQKAEGAFK
Ga0247723_100042513	F003049	AGGA	MKNANKIIGCRKSKKGENTKGLGMITFGKSSIDKTKYVLVDITYDDKAGKELYEAGMLALKHDPEAVIEYAIKKALAGMAKCKK
Ga0247723_100042518	F008741	GAG	MSVKTIKYSQRLGDVLRCLPAAKYLADQGHEVFFDCFEQYHGVFDLVSYVKAGSKGDVLDLEIWPNRYNDFIKSRKTWHDFVYSHPEIREADKTNIVLDKLDDKPAEGLPESYNLVAPFGISQTFYRNPLTLIQDAVKEFGKDNVFVLCPPDIRIQGLNTYTAKSFEQMAKAIRGADQFLAVNSSPIIIASAVRRGKESKFWGEKNEAEVQNVFHFEGLVRVD
Ga0247723_100042519	F005584	AGGTGG	MAGSIPTSYFATDLSYMIEDLYQTVTGLGSSSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0247723_100042521	F009142	N/A	MTNSVQINVEDALDNLLANIPNLNVYKTNRVGAKLFPFATISASVGDQLLGNYTGVYEVAVTIDYSDTAAKISQEAFDAEYCSIFEAFYSETPPLFTKIQNNIIDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSELDDGLRYLNFYQKQNSMYVAVI
Ga0247723_100042524	F014487	GAG	MKLILLSFFLCSCSPKPEHNNILPRYSDMGAAEDAGKVK
Ga0247723_100042527	F006138	GAGG	MPAVTVGNSGLVFGLSTETIGLVQSFSETRNVEKNEVRNASGDVTGVGYYNPTTAYSLSVAITGANTGLTVGGAFASLANATTVGTCRIDSIALNKTNTGFVTIDISATGYPNVS
Ga0247723_100042528	F019290	N/A	MEGSSYWGTTNIKVASAVAAFGGTLRQADPVTHIVREDGSKQITFWFNSGGSGSIAKKEMEAKWSDMTSDQEAPIRYVRAALENRETLLGLVKRAEPIQIIKRGGQTLLVPVNAKPELKRAILRAM
Ga0247723_100042529	F090073	AGG	MNNILDDELNSSFVKPGRDYKGEAIADYTEGSRLLMLQCKEPQDSSVYFVWAFLYIHILIAKNRKEAIKLAWNRDEFRDKLLGWIEDKTEEDRTVATNIVSEMIEEASRAKVSVVLSGNIASGND
Ga0247723_100042537	F012113	N/A	MEQLLAFIQSQDVFAWVGALVALLSAVIAVASLIPGDEPENTLQKVVDFLSKFSRK
Ga0247723_100042538	F025739	AGGA	MKKLLTNAVCEIQKWTLGFIAASLICGCATTRPYDIGEVPNQDSISDFIMRYDKLDRTKATPDEYRQLYGQTLKTISRLVEENERLRKRLDQ
Ga0247723_100042540	F011284	N/A	MTSTQGVEKTPKHFTKKHELHLTTLQVAAVESMEKKYKRGVEEHGGTKLWEMPSVKLVENAIEEATDQLTYLLTLRSQMHIVLELARDGCTDETLTNPRARECCHLIYTTLTGQSKPPL