Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1000361 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 31412 |
Total Scaffold Genes | 72 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (11.11%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F013761 | Metagenome / Metatranscriptome | 268 | Y |
F024310 | Metagenome / Metatranscriptome | 206 | Y |
F024311 | Metagenome / Metatranscriptome | 206 | Y |
F025746 | Metagenome / Metatranscriptome | 200 | Y |
F058139 | Metagenome / Metatranscriptome | 135 | N |
F060912 | Metagenome / Metatranscriptome | 132 | Y |
F074869 | Metagenome / Metatranscriptome | 119 | Y |
F084225 | Metagenome / Metatranscriptome | 112 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247723_100036120 | F060912 | N/A | MNKKEIRSAINKAAYELAKSMGYEIHDDEGDGTVLFAPVDYTTIDDTITWHRSYHETCVLNWASDKIKQDAFHIDAHMKPIIEHYNNQYINKRVMA |
Ga0247723_100036125 | F024310 | N/A | MNVNELKPNQMIYGNKGNVWSNTAHIFESGKGNLCGTPALATNWARIEGVEVIGCPECLAKANAN |
Ga0247723_100036126 | F013761 | N/A | MKIELCITKDRVPFIVGEFGADRVTVSEYNEEQDKIEFELTSQLDVLYMFHAGVRCGSDNMAKALSK |
Ga0247723_100036143 | F058139 | N/A | MAIYNNDKDPNVIQWEQEQIELQINEPRRKYEQWWEQNKERILAEDKLNHDMQFKTAYHKHGDY |
Ga0247723_100036150 | F084225 | N/A | MSVIITNDKLIVHSYMVPVVFDSIVEPGTRYVIADGKWTEIPNHLGYKHITHFRKEYKGAKNEAFKNNYETEVAGSKGKSYTVKCVDDVWSCTCPAYGWSGNSHTCKHITQVKKDNGWN |
Ga0247723_100036156 | F074869 | N/A | MTAELITKCFEVENWTRSLTLRGLDREEIVYRIDEMYEPETLDEMEAYSEAILYARLGVL |
Ga0247723_10003616 | F025746 | N/A | MNIKAFKKLIKEAVIDAIHEELPYILEEHMAKQDKKALREGKVMNFTSANVPTNPLPGGVRSQLAAQMGEAFGFQPSTPKLEVINAVDESTGEPVNPYLAFINDAANNMTAQDRSGLRNL |
Ga0247723_100036160 | F024311 | N/A | MDKYQSLGNNLFGFEMFEEVFKVINERGYQSNEQMFKAGVASAEAAVRRLREEYYETIKTQLDEQESK |
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