NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000361

Scaffold Ga0247723_1000361


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000361 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31412
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (11.11%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013761Metagenome / Metatranscriptome268Y
F024310Metagenome / Metatranscriptome206Y
F024311Metagenome / Metatranscriptome206Y
F025746Metagenome / Metatranscriptome200Y
F058139Metagenome / Metatranscriptome135N
F060912Metagenome / Metatranscriptome132Y
F074869Metagenome / Metatranscriptome119Y
F084225Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100036120F060912N/AMNKKEIRSAINKAAYELAKSMGYEIHDDEGDGTVLFAPVDYTTIDDTITWHRSYHETCVLNWASDKIKQDAFHIDAHMKPIIEHYNNQYINKRVMA
Ga0247723_100036125F024310N/AMNVNELKPNQMIYGNKGNVWSNTAHIFESGKGNLCGTPALATNWARIEGVEVIGCPECLAKANAN
Ga0247723_100036126F013761N/AMKIELCITKDRVPFIVGEFGADRVTVSEYNEEQDKIEFELTSQLDVLYMFHAGVRCGSDNMAKALSK
Ga0247723_100036143F058139N/AMAIYNNDKDPNVIQWEQEQIELQINEPRRKYEQWWEQNKERILAEDKLNHDMQFKTAYHKHGDY
Ga0247723_100036150F084225N/AMSVIITNDKLIVHSYMVPVVFDSIVEPGTRYVIADGKWTEIPNHLGYKHITHFRKEYKGAKNEAFKNNYETEVAGSKGKSYTVKCVDDVWSCTCPAYGWSGNSHTCKHITQVKKDNGWN
Ga0247723_100036156F074869N/AMTAELITKCFEVENWTRSLTLRGLDREEIVYRIDEMYEPETLDEMEAYSEAILYARLGVL
Ga0247723_10003616F025746N/AMNIKAFKKLIKEAVIDAIHEELPYILEEHMAKQDKKALREGKVMNFTSANVPTNPLPGGVRSQLAAQMGEAFGFQPSTPKLEVINAVDESTGEPVNPYLAFINDAANNMTAQDRSGLRNL
Ga0247723_100036160F024311N/AMDKYQSLGNNLFGFEMFEEVFKVINERGYQSNEQMFKAGVASAEAAVRRLREEYYETIKTQLDEQESK
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