Scaffold Ga0247723_1000344

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000344
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31924
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (19.61%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009003	Metagenome / Metatranscriptome	324	Y
F027408	Metagenome	194	N
F037731	Metagenome	167	N
F040621	Metagenome	161	N
F043894	Metagenome	155	N
F062477	Metagenome	130	Y
F079655	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100034411	F040621	GAG	MLNFNVPSHIQRERLNTCKKCKFYNGTFGTCGTPIVGNNVNPEENDVTYYKEKIKLCGCFMDVKTKFRFASCPARKWFAQDMSDEEIAALDIFIGKISKANKIQSEDLQMLYYWYSKITKKHERPSGCASCIRDLITEFRRQLGKIDKP
Ga0247723_100034430	F037731	N/A	MSTKKQTKPKSEQSSDTYKFIRYNLQLLDGLWSIPIAFALFIIAGTLSAEYFGDALISTEYVQYIVLASLIMVFANFITFLGIRFNFKALQREVYSKEIKYELNTYLTTWQKVVLYLLLYAFYFAAFLFILHMLMTVTA
Ga0247723_100034432	F062477	N/A	MKLIISFLLLLLTPLISIGQPSKNRTAYLKQDFTPELTTYDQQLFNLNFNSMLYWYRTAYEIDSLYQMERLKVTYYAKITGIQAASYETLAEIYANKQSIEKAIQSEKDAEITKLKKTNRRLIITNTALTLGITGLAFSTIYFAIL
Ga0247723_100034437	F079655	N/A	MKQEDKKETAMRRLSKALRKRFQGPSVNISWIELDAFMMKAQTWELENILNAYSEGYSDSKNGLPNKAENESNTNV
Ga0247723_100034440	F009003	N/A	MKAKDKAWQLYSNYFDIVEAGDQHGDLALMHMRAINAALYCVDEALKNAPDDIVNDFEGTGEYYSVKAYYHHVKNEILKMNGSKENALNRRAEDRAN
Ga0247723_100034449	F027408	AGGAGG	MKQYDKQKETDLLRKLFVLTAKRSMRPAMTDNLTMRLIFEELHLLTDKEEYKL
Ga0247723_10003448	F043894	N/A	MRKRQELNQLIARTVGSKAALLRAMQRSNTPIVKKTLHNWCDDPGSIKLRQLINLSRVMDLPVCEIVNCITIKNEGDE