NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247723_1000324

Scaffold Ga0247723_1000324


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000324 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32732
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (72.55%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014494Metagenome / Metatranscriptome262Y
F036693Metagenome / Metatranscriptome169Y
F047646Metagenome / Metatranscriptome149Y
F075702Metagenome / Metatranscriptome118N
F078236Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100032427F014494AGGMTTKYFECESCGARGKIVLKGDDHSTADLVYCPVCSADIYEEEDLDEEE
Ga0247723_100032444F078236GGAMALKHIIKHTETEIVFKCYVTDSAGGDIDLSLENNMTKSTQVYVAPTSVPDETGGGLVQYTGSRVFITGIWWGLKKDKQLDITRIINPTGPVLHSHYYLLNAGYYDYDDFSDRVYANKDIRLTFDGPGHCVIRLRKEGWTPKVETAVFGPYDNETAVGS
Ga0247723_100032447F047646GGAGMSILNDLREQAGLGGPAASLANELLVIRENFEQGQLSREEYDYLLQEIALVRAQQELASDEIACRWIAAAAQALIALA
Ga0247723_10003245F036693AGGAMYNKTLKPRDPVAKDLRTPKYRMRVVESKVQYIRKPKHRKEDYES
Ga0247723_10003246F075702N/AMITIENLTPYQVEMLDHMWSLDSIEEYEEWYNLLDDEDQRLADSLQQMIILAEMDNLIDDCKDAKELLKKFAL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.