Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1000246 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 35722 |
Total Scaffold Genes | 62 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (69.35%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
Associated Families | 9 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004111 | Metagenome / Metatranscriptome | 452 | Y |
F005175 | Metagenome / Metatranscriptome | 409 | Y |
F006218 | Metagenome / Metatranscriptome | 378 | Y |
F013409 | Metagenome / Metatranscriptome | 271 | N |
F013885 | Metagenome / Metatranscriptome | 267 | Y |
F028431 | Metagenome / Metatranscriptome | 191 | N |
F031850 | Metagenome | 181 | N |
F034179 | Metagenome / Metatranscriptome | 175 | Y |
F090367 | Metagenome / Metatranscriptome | 108 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247723_100024610 | F028431 | GGAGG | MHNKKTIILNGLDVLTNRKMISIKLPVWKKLISCSRHEDITITKLIDKLISKYIEDNNYDIEKIFNDNLEVKQDVLTSLIDYNFSTQDQIEYK |
Ga0247723_100024616 | F005175 | GGAG | MIDQELHVEDVIEIYDEKIVLLKKEIDRLNEEIQVLNIELMKLRANVIS |
Ga0247723_100024618 | F090367 | AGGA | MKHKLTQYQEDHKLSNKELAKLFGLTGTNPTVTILRWKNCQRIPHPKFMKVITERTKGSIQPNNFYESWYETHKLX |
Ga0247723_100024621 | F013409 | AGTAG | MKVILTIILMNGTVYNLGYEIDSYSARICDKLFDKVTYIGKASGKNKYGTFYKGKEVFAHSCSYEKKAXLRNTSMLTLAQ |
Ga0247723_100024622 | F004111 | AGG | MKEKIKQVNDLCAANGSYLNQHGKKTVSAWSKIKYFRELFGTEYGINCVIQEHSDRYVIMKCIITKSDPEHIVATGYSKQYRDKPGYLEIAETFAITRALSFMGILLEDITSKEEYEELDIPIQPMNGKDTTSNNINYDDSIINELTKKIAFAHHTAKLDFLWRANKDLLNQIKIKDLATYNSILQRFNSKRDEITTQNEV |
Ga0247723_100024629 | F006218 | N/A | MCGKEHMSNEGGWVINAEKLNFCHSLDHSCYDIYFNNVRTSEKQKVVINTENDKRMNMYIEYLKKLKCKHKYAGE |
Ga0247723_100024632 | F034179 | AGGA | MSDQIMTASGQMYSKKVSLLSQQGSNVKIKVKKKNGKKALRK |
Ga0247723_100024640 | F013885 | GGAG | MLNYTDIKNYWTKFYADAFEDAKSFWKNYVDTVEKLYKK |
Ga0247723_100024662 | F031850 | N/A | MNRSMYQDDDDDNDFYTANVKAVVYIEKDNSITVKFTGLQNKEHSAIFSSWLMMLLNIENAIISNEQSKAIH |
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