Scaffold Ga0247723_1000246

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000246
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35722
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (69.35%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004111	Metagenome / Metatranscriptome	452	Y
F005175	Metagenome / Metatranscriptome	409	Y
F006218	Metagenome / Metatranscriptome	378	Y
F013409	Metagenome / Metatranscriptome	271	N
F013885	Metagenome / Metatranscriptome	267	Y
F028431	Metagenome / Metatranscriptome	191	N
F031850	Metagenome	181	N
F034179	Metagenome / Metatranscriptome	175	Y
F090367	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_100024610	F028431	GGAGG	MHNKKTIILNGLDVLTNRKMISIKLPVWKKLISCSRHEDITITKLIDKLISKYIEDNNYDIEKIFNDNLEVKQDVLTSLIDYNFSTQDQIEYK
Ga0247723_100024616	F005175	GGAG	MIDQELHVEDVIEIYDEKIVLLKKEIDRLNEEIQVLNIELMKLRANVIS
Ga0247723_100024618	F090367	AGGA	MKHKLTQYQEDHKLSNKELAKLFGLTGTNPTVTILRWKNCQRIPHPKFMKVITERTKGSIQPNNFYESWYETHKLX
Ga0247723_100024621	F013409	AGTAG	MKVILTIILMNGTVYNLGYEIDSYSARICDKLFDKVTYIGKASGKNKYGTFYKGKEVFAHSCSYEKKAXLRNTSMLTLAQ
Ga0247723_100024622	F004111	AGG	MKEKIKQVNDLCAANGSYLNQHGKKTVSAWSKIKYFRELFGTEYGINCVIQEHSDRYVIMKCIITKSDPEHIVATGYSKQYRDKPGYLEIAETFAITRALSFMGILLEDITSKEEYEELDIPIQPMNGKDTTSNNINYDDSIINELTKKIAFAHHTAKLDFLWRANKDLLNQIKIKDLATYNSILQRFNSKRDEITTQNEV
Ga0247723_100024629	F006218	N/A	MCGKEHMSNEGGWVINAEKLNFCHSLDHSCYDIYFNNVRTSEKQKVVINTENDKRMNMYIEYLKKLKCKHKYAGE
Ga0247723_100024632	F034179	AGGA	MSDQIMTASGQMYSKKVSLLSQQGSNVKIKVKKKNGKKALRK
Ga0247723_100024640	F013885	GGAG	MLNYTDIKNYWTKFYADAFEDAKSFWKNYVDTVEKLYKK
Ga0247723_100024662	F031850	N/A	MNRSMYQDDDDDNDFYTANVKAVVYIEKDNSITVKFTGLQNKEHSAIFSSWLMMLLNIENAIISNEQSKAIH