NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000246

Scaffold Ga0247723_1000246


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000246 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)35722
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (69.35%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004111Metagenome / Metatranscriptome452Y
F005175Metagenome / Metatranscriptome409Y
F006218Metagenome / Metatranscriptome378Y
F013409Metagenome / Metatranscriptome271N
F013885Metagenome / Metatranscriptome267Y
F028431Metagenome / Metatranscriptome191N
F031850Metagenome181N
F034179Metagenome / Metatranscriptome175Y
F090367Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100024610F028431GGAGGMHNKKTIILNGLDVLTNRKMISIKLPVWKKLISCSRHEDITITKLIDKLISKYIEDNNYDIEKIFNDNLEVKQDVLTSLIDYNFSTQDQIEYK
Ga0247723_100024616F005175GGAGMIDQELHVEDVIEIYDEKIVLLKKEIDRLNEEIQVLNIELMKLRANVIS
Ga0247723_100024618F090367AGGAMKHKLTQYQEDHKLSNKELAKLFGLTGTNPTVTILRWKNCQRIPHPKFMKVITERTKGSIQPNNFYESWYETHKLX
Ga0247723_100024621F013409AGTAGMKVILTIILMNGTVYNLGYEIDSYSARICDKLFDKVTYIGKASGKNKYGTFYKGKEVFAHSCSYEKKAXLRNTSMLTLAQ
Ga0247723_100024622F004111AGGMKEKIKQVNDLCAANGSYLNQHGKKTVSAWSKIKYFRELFGTEYGINCVIQEHSDRYVIMKCIITKSDPEHIVATGYSKQYRDKPGYLEIAETFAITRALSFMGILLEDITSKEEYEELDIPIQPMNGKDTTSNNINYDDSIINELTKKIAFAHHTAKLDFLWRANKDLLNQIKIKDLATYNSILQRFNSKRDEITTQNEV
Ga0247723_100024629F006218N/AMCGKEHMSNEGGWVINAEKLNFCHSLDHSCYDIYFNNVRTSEKQKVVINTENDKRMNMYIEYLKKLKCKHKYAGE
Ga0247723_100024632F034179AGGAMSDQIMTASGQMYSKKVSLLSQQGSNVKIKVKKKNGKKALRK
Ga0247723_100024640F013885GGAGMLNYTDIKNYWTKFYADAFEDAKSFWKNYVDTVEKLYKK
Ga0247723_100024662F031850N/AMNRSMYQDDDDDNDFYTANVKAVVYIEKDNSITVKFTGLQNKEHSAIFSSWLMMLLNIENAIISNEQSKAIH

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