Basic Information | |
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Taxon OID | 3300028025 Open in IMG/M |
Scaffold ID | Ga0247723_1000208 Open in IMG/M |
Source Dataset Name | Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 37808 |
Total Scaffold Genes | 58 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 50 (86.21%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: West Virginia | |||||||
Coordinates | Lat. (o) | 39.6017 | Long. (o) | -79.9761 | Alt. (m) | Depth (m) | 2281 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001531 | Metagenome / Metatranscriptome | 676 | Y |
F001599 | Metagenome / Metatranscriptome | 665 | Y |
F001706 | Metagenome / Metatranscriptome | 648 | Y |
F008808 | Metagenome | 327 | Y |
F009064 | Metagenome / Metatranscriptome | 323 | Y |
F011647 | Metagenome / Metatranscriptome | 288 | Y |
F018684 | Metagenome / Metatranscriptome | 233 | Y |
F052382 | Metagenome | 142 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247723_100020812 | F001706 | AGG | MKHWEHHPTPIDGCFGCKGLTLQMNSGDAKRDIPDKKWNSELQAYRDARAQGIQPAGTTMRHVQEAHRASEVLGKAYNADTMPKTKDITPKAATVMKEIGQI |
Ga0247723_100020815 | F011647 | GAG | MSSGQRKRHDGWNKSIMRDGVVVILRKDGSEKVRLDPRTKEILKGSK |
Ga0247723_100020819 | F001599 | AGG | MSKKDSVALIWCDNGMVDGKFMQGVADVMLKSGVEFATTLRSQGNQIARQRQTSIDYWYDKTEHEWLLWIDSDVVISPEKFKLLWDNKDAEKRPLITGVYFTTDTPEEPLMAPLPTVFNFVNNGDGGFGLTRVHPLPVNQLIKVDAAGMGFVLMHRSIVPKLREIAPDGQLFMEMGRGTKFIGEDIFFFVLCDKAEVPLYCHTGATVPHMKRFSFDEHYYAAFFGKPKEEPKSKLVTPNKKIITPR |
Ga0247723_100020838 | F018684 | GAG | MANEDWKLQVSYKTPSGDMINIRANTADELSVLLEGVGDYSPQIAATQQKIVGSYALNPSLTTSSTTSTKPSKYSAPTPVSVVSGTAAPVCKHGARIWREGISKASGKPYAFWACPSPQGTPDQCKPVN |
Ga0247723_100020840 | F009064 | GAG | MIIQLNKDEVRVCTLLAVERWLAKFGSTDQPNYAQGKADGKLEPEINANIRANVCEWAVAKHYNMSWNVPYYPNALHKKRHSLPDVGENVEVRSVRTQDSIPFWAKDKGKIIIGTKCLDTEYYSEVEIFGVAYPEEFIKPEYYDSYINGWRIPISGFTHE |
Ga0247723_100020841 | F052382 | N/A | MSSYGKRKGATFETGVVKWLRSKDILAERLTKAGAKDEGDVVAFLDGAANILELKATKKLDLPQFWREAEVEAENYAKARGLKEVPYKFVIVKRRQAGIDKAWVVEDFEQWTKRAGK |
Ga0247723_100020843 | F008808 | AGG | MDRIIPPCPECGKRFNNVFEATDHILEDDEEFDPALILPNGARLMIGSLLRCLYKYADKPDQIKTITQSTYMTLFTAETHPAAMKDIVEEMIIESQMMDIDNEIKHFLGRNSNE |
Ga0247723_100020847 | F001531 | GGA | MDWDSIERWDYIVTAVASEYHRKFSMVELEDIRQSLYQWFAEHPNKLKDWEAIGDKDAKNLIYRSLRNQALDYCQRWKAKSVGYDIGDIHYYDSEIVEALLPPVLRGEYGVTHKLNLGFTGRPSAPAEGGNLTIMMLEIDSGYWKLSKDDRRIIFLRFAENLDFGEIANYLELGTDSAARMRLKRAITRLINKIGGYKPYRDVDTTSEEPEEEHQPPVE |
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