NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247723_1000208

Scaffold Ga0247723_1000208


Overview

Basic Information
Taxon OID3300028025 Open in IMG/M
Scaffold IDGa0247723_1000208 Open in IMG/M
Source Dataset NameSubsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37808
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (86.21%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: West Virginia
CoordinatesLat. (o)39.6017Long. (o)-79.9761Alt. (m)Depth (m)2281
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001531Metagenome / Metatranscriptome676Y
F001599Metagenome / Metatranscriptome665Y
F001706Metagenome / Metatranscriptome648Y
F008808Metagenome327Y
F009064Metagenome / Metatranscriptome323Y
F011647Metagenome / Metatranscriptome288Y
F018684Metagenome / Metatranscriptome233Y
F052382Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0247723_100020812F001706AGGMKHWEHHPTPIDGCFGCKGLTLQMNSGDAKRDIPDKKWNSELQAYRDARAQGIQPAGTTMRHVQEAHRASEVLGKAYNADTMPKTKDITPKAATVMKEIGQI
Ga0247723_100020815F011647GAGMSSGQRKRHDGWNKSIMRDGVVVILRKDGSEKVRLDPRTKEILKGSK
Ga0247723_100020819F001599AGGMSKKDSVALIWCDNGMVDGKFMQGVADVMLKSGVEFATTLRSQGNQIARQRQTSIDYWYDKTEHEWLLWIDSDVVISPEKFKLLWDNKDAEKRPLITGVYFTTDTPEEPLMAPLPTVFNFVNNGDGGFGLTRVHPLPVNQLIKVDAAGMGFVLMHRSIVPKLREIAPDGQLFMEMGRGTKFIGEDIFFFVLCDKAEVPLYCHTGATVPHMKRFSFDEHYYAAFFGKPKEEPKSKLVTPNKKIITPR
Ga0247723_100020838F018684GAGMANEDWKLQVSYKTPSGDMINIRANTADELSVLLEGVGDYSPQIAATQQKIVGSYALNPSLTTSSTTSTKPSKYSAPTPVSVVSGTAAPVCKHGARIWREGISKASGKPYAFWACPSPQGTPDQCKPVN
Ga0247723_100020840F009064GAGMIIQLNKDEVRVCTLLAVERWLAKFGSTDQPNYAQGKADGKLEPEINANIRANVCEWAVAKHYNMSWNVPYYPNALHKKRHSLPDVGENVEVRSVRTQDSIPFWAKDKGKIIIGTKCLDTEYYSEVEIFGVAYPEEFIKPEYYDSYINGWRIPISGFTHE
Ga0247723_100020841F052382N/AMSSYGKRKGATFETGVVKWLRSKDILAERLTKAGAKDEGDVVAFLDGAANILELKATKKLDLPQFWREAEVEAENYAKARGLKEVPYKFVIVKRRQAGIDKAWVVEDFEQWTKRAGK
Ga0247723_100020843F008808AGGMDRIIPPCPECGKRFNNVFEATDHILEDDEEFDPALILPNGARLMIGSLLRCLYKYADKPDQIKTITQSTYMTLFTAETHPAAMKDIVEEMIIESQMMDIDNEIKHFLGRNSNE
Ga0247723_100020847F001531GGAMDWDSIERWDYIVTAVASEYHRKFSMVELEDIRQSLYQWFAEHPNKLKDWEAIGDKDAKNLIYRSLRNQALDYCQRWKAKSVGYDIGDIHYYDSEIVEALLPPVLRGEYGVTHKLNLGFTGRPSAPAEGGNLTIMMLEIDSGYWKLSKDDRRIIFLRFAENLDFGEIANYLELGTDSAARMRLKRAITRLINKIGGYKPYRDVDTTSEEPEEEHQPPVE

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