Scaffold Ga0247723_1000012

Overview

Basic Information

• Taxon OID: 3300028025
• Scaffold ID: Ga0247723_1000012
• Source Dataset Name: Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FC
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 114826
• Total Scaffold Genes: 127
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (13.39%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: West Virginia
• Coordinates
  • Lat. (^o): 39.6017
  • Long. (^o): -79.9761
  • Depth (m): 2281

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010082	Metagenome	308	Y
F021755	Metagenome / Metatranscriptome	217	Y
F026824	Metagenome / Metatranscriptome	196	Y
F026863	Metagenome / Metatranscriptome	196	Y
F028487	Metagenome	191	Y
F034105	Metagenome	175	Y
F036664	Metagenome	169	Y
F039634	Metagenome / Metatranscriptome	163	Y
F053807	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247723_1000012111	F010082	N/A	MLQPRLTNCIECASIPALLTDIDCKLTDLAKQEYNNIIFSMTNYLPGPVIGDLLNYKRILTYKYCNPDYAIRFTVSQIASRVKVLIHK
Ga0247723_1000012123	F026863	N/A	MENKEVKIQKIPLDALIETLVSLYNQGIDYIDISGKPGTDFDSMAIVFTKDYMTEEGKKNFGEIDELDLEIGSGKLTDDDINQLI
Ga0247723_1000012127	F026824	N/A	MVVLLLGCIVGLLSVVVCIWGFVHFDEWEIGIEFLPKDYNNFELGISNRNYELTDGGLEQELRVGLLLFTFLMIFRKFDA
Ga0247723_100001222	F039634	N/A	MRLNFKMYNTLPTKKSHWWQVVLFPTVSLMNNIQKHDPYVAVNAEYLFWSITTIISYGKKGQHPYVTR
Ga0247723_100001228	F036664	N/A	MTIEDLKQAIQDHVEWFETTEGDDLECIGIENLEGILSEYLKTEIKLSLNGDV
Ga0247723_100001235	F021755	GAG	MTKKQKQIKMKRQILKLHDKKYADLLDDRVKECILKNENYEIEYKGKIMVLTPEDLKTKCLSRQYIEKPKYGEKPYHLLSYLWEPTKTTEK
Ga0247723_100001240	F028487	N/A	MYNSEILDHLISKYGIDDVIKFCDMEREKNDLLAQSVDEDKQHHPEPNEWRFERDWWAESGKQLKQRI
Ga0247723_10000126	F053807	N/A	MSYSLIFSAKPHCTHTITVYEPDQQDSSYRRSIKACSRLIDAIFAAKAHYTPSRRLHVKGRRYMYISSDEYKLIRFKNY
Ga0247723_100001292	F034105	N/A	MNQETKQLPVPSLTAEKVQLLMNYANEKLPTMYGNDILKFIEAVALELAKSQGAIEVPTEEI