Scaffold Ga0256382_1102169

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256382_1102169

Scaffold Ga0256382_1102169

Overview

Basic Information
Taxon OID	3300028022 Open in IMG/M
Scaffold ID	Ga0256382_1102169 Open in IMG/M
Source Dataset Name	Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	688
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	34.0321	Long. (^o)	27.821	Alt. (m)		Depth (m)	750
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008252	Metagenome	336	Y
F020919	Metagenome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256382_11021691	F008252	AGGA	MVNNKYPNSSELWFFYDDEISIKWDCDKSFTVWQKNDIVNNFTVMESMTPKQAEQNADEWLADVLQEEKLRHADIN
Ga0256382_11021692	F020919	AGGAG	MPDLRIKTAKENGDLPKDSGRSFKALTLFDALKNTAVIKKYNKQFEKEFGRPSVFASPTKVPRS

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