Scaffold Ga0256382_1013085

Overview

Basic Information

• Taxon OID: 3300028022
• Scaffold ID: Ga0256382_1013085
• Source Dataset Name: Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1639
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 34.0321
  • Long. (^o): 27.821
  • Depth (m): 750

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054784	Metagenome	139	Y
F088736	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256382_10130851	F088736	N/A	DEIMEFAMDHLEQTFEDAGHTIADLAVMVKQTEIPKARPDGPSQPSRMLCYGTIPGYTGDGPEYYFFDKEQDYDYSACEVKGVR
Ga0256382_10130853	F054784	AGGAG	MKLENLGKNQTRLIMQVQDHTENFTWDKDIYFSYGTPVLVVNYRDAEIHETAEKYSVTTSKHINAFKRMCNRYDERGGPVTFEHGREWATYLAPESRMRVVAEEC