Scaffold Ga0265352_1000239

Overview

Basic Information

• Taxon OID: 3300028021
• Scaffold ID: Ga0265352_1000239
• Source Dataset Name: Soil microbial communities from Maridalen valley, Oslo, Norway - NSE5
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1679
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9989
  • Long. (^o): 10.7903

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001500	Metagenome / Metatranscriptome	682	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265352_10002391	F001500	GGA	MPNPNPLAGIVPQVVHPVNDGETTITEYIEKIEGEVALDTYVRAQTSAPEVVKRLTELENCVWRLASAALALSDVDRHPELRAAAEDAKVVLKNRLEVDEAKHRFHSELGVVKEELPITK