Scaffold Ga0256381_1008417

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256381_1008417

Scaffold Ga0256381_1008417

Overview

Basic Information
Taxon OID	3300028018 Open in IMG/M
Scaffold ID	Ga0256381_1008417 Open in IMG/M
Source Dataset Name	Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1660
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	34.0321	Long. (^o)	27.821	Alt. (m)		Depth (m)	1600
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008252	Metagenome	336	Y
F020919	Metagenome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256381_10084172	F008252	AGGAG	MSNYSGLWFFYDNDISIYWNRSHTFNVWNNGKEVNCFTVMETMTPKQAEQNADEWLADVLQEEKLRHADIN
Ga0256381_10084174	F020919	N/A	AKENGDLPKDSGRSFKALTLFDALKNTAVIKNYNQQFEKEFGRPSVFASSTKTPRS

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