Scaffold Ga0256381_1000318

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0256381_1000318

Scaffold Ga0256381_1000318

Overview

Basic Information
Taxon OID	3300028018 Open in IMG/M
Scaffold ID	Ga0256381_1000318 Open in IMG/M
Source Dataset Name	Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5088
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (41.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	34.0321	Long. (^o)	27.821	Alt. (m)		Depth (m)	1600
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F040391	Metagenome	162	Y
F066145	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256381_10003184	F066145	N/A	MAKKKKKVVQPIKEIEIINRRTRKFRKININQKELIVYNKVLNEFQLLPVISSSYEQHRDIPNE
Ga0256381_10003186	F040391	N/A	MAKKSTKSSLIKQLIKQISGNLTEEDELIPEVAIKGNGEMWCWDPANRTHVKIYRGVKAFILQENFDHLERTLIYTIGGNMICIEPSELLYTGCD

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