Scaffold Ga0265354_1000468

Overview

Basic Information

• Taxon OID: 3300028016
• Scaffold ID: Ga0265354_1000468
• Source Dataset Name: Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7009
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9979
  • Long. (^o): 10.7895

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F085961	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265354_10004683	F085961	GGAGG	VTTRSTQPPWEFLLSASKNSLQSFELSRLSHAANIRKEIAALLDQWMDDNANATLARLLLEERERSAREADLLSTGKTRNSVTHPVSDNFLADRTAPQNENTGQS
Ga0265354_10004686	F000188	GGAGG	MSVKPELAFDVCWEVYRGAREVMESKRGISALNWKDTGKFLWRPDIRPRLNEWVADFALAGQKALEGPDWASRMVLFRLYYLGLAPYENARHFLGLSERSWVNWTEEVRQRVGKELLRRGMFPPRKYFSEAA