Scaffold Ga0265346_100014

Overview

Basic Information

• Taxon OID: 3300028012
• Scaffold ID: Ga0265346_100014
• Source Dataset Name: Plant litter microbial communities from Maridalen valley, Oslo, Norway - NLE4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6706
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Russulales → Russulaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9992
  • Long. (^o): 10.7901

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061340	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265346_1000142	F061340	AGG	LKSFIEIKYIFKMNLTRKQITFLSHVPSDIKVDMTSGXRHHYFDGFSIGVISSFIESIGDDKIYLLIPLFSNAKSLQIATLNLSQPFLVDNKSNPDLIDEFIIDQXNSSGFNKKQDISFTFSFKFKRVXFSYI