NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228674_1187899

Scaffold Ga0228674_1187899


Overview

Basic Information
Taxon OID3300028008 Open in IMG/M
Scaffold IDGa0228674_1187899 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 1D_r
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)669
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029762Metagenome / Metatranscriptome187Y
F103285Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0228674_11878991F103285AGAAGMVDIIFIDDNYLYKNFPLPKRLDRGALLALIQLEQYTSIQDLLGSCLYEHIEAKVVSESLSTKEEGLFKLVKYSLAMYSAKAAISVLRSETARTKNEESKSDQRSLDAIASSIES
Ga0228674_11878992F029762N/APMDVSNLDKTIDVLSRLNDAKILTAHNITSPTLFGVMVAGKLGGTGNELVTAYQIFRATETLPNRKTILDGLNTILSTVGYDKMNVGIVEEEISLESLKGANTEDISNG
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