NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228674_1016155

Scaffold Ga0228674_1016155


Overview

Basic Information
Taxon OID3300028008 Open in IMG/M
Scaffold IDGa0228674_1016155 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 1D_r
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3263
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014905Metagenome259Y
F060127Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0228674_10161553F060127N/ALVGLLSPGDYAGYAEEGRRLAVDVPNVTPMDAARFIAEATPIIGDAMAAKEIYDEATSENPNWALVGALGGAAVLGLFPGIGDAAAKAVKSGARGLLDTAKRVEVDPNAMGSLLGNVRLKPASKANKADLDPLGYQKTRMNDAYLSDTDVRSTDTGENLSRRPMSWEETEGKVVLPFYGDRTSRGLLVEGVNDVNFDQPVYTEGGVDFMVGPAAQADNSIWASNQNIITRIDKEAAKAAEKFEGADILGLTGSMAPDANDFATMTGAAMAELVKGAKITKKSAKEFDEIMRSIDPDFVGVLSPKIREWAETTTSPKRKSFIRLMDSAPMQSKGFPSPAEARYSVTDPTQKDMPAGMFGLGAARVDTSAPLMFNAPKGNLPKTSVPHSTYNTQISGEYLGSLPPVPQGLLFKDVYNAMEGKVTKSGQPLNEAHKTHAIKTKMPAQKITPEILEGILSYLSRMEK
Ga0228674_10161554F014905AGGMKQVPFHKLSPRMKNIRMNQWIKTYIGKGLSLEEAQFAARWRAGYWKLSSRMEKIMDDLGEL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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