NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209168_10028290

Scaffold Ga0209168_10028290


Overview

Basic Information
Taxon OID3300027986 Open in IMG/M
Scaffold IDGa0209168_10028290 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3111
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000391Metagenome / Metatranscriptome1196Y
F062000Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0209168_100282903F000391AGGMNPEPQPSESPYRVRIETETGQSATVPIAVLTPKQLEIFLQTEFQRLAQEAGVKGARIHVERAIAADYEQVLREVTACLSSAKARAA
Ga0209168_100282904F062000AGGAGMWKNKDDAPSMPREFDSKQMSESPSEMEGEGVYLDNRSEQVGPQRVFAQAQPSTPVSMAAYTEAVNEFTRNATAFIEHVPLLTKARDAYDKAMKANAEVRKVLDKGEEDLRALMNHLIQMLNSNVVMVAPDKKRPEPTQLETQEGTTKRSVV

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