Scaffold Ga0209168_10001914

Overview

Basic Information

• Taxon OID: 3300027986
• Scaffold ID: Ga0209168_10001914
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15651
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003165	Metagenome / Metatranscriptome	504	Y
F004246	Metagenome / Metatranscriptome	447	Y
F006203	Metagenome / Metatranscriptome	379	Y
F015646	Metagenome / Metatranscriptome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209168_100019142	F006203	AGGAGG	MLRSVVELMGDLLLSALMVLLGSCIVGSIVAALRAVSGGS
Ga0209168_100019143	F015646	GGA	MKTVYFAVVLSLTYLLDLGGSAYAARNNAHSVEISDAVQIGGTKLKPGNYKVEWQGTGPAVQVSFQQNGKTVVTVPGMLKTNDDQVIRDAIVTEATGTGASTLKEIDFRHLKQALVFDHNLGSM
Ga0209168_100019145	F004246	GAGG	MIDDWDEREDAVAAGSICPVPDCGALVVSYRPLERTGRDNSRSWCEFTCLHCGIDFSVPDDELIFQSVPKEWLLARVQAV
Ga0209168_100019146	F003165	AGGAG	MAKVIEFYVPKNLRKPLKWAPQLQFGKVIEFSSRTKKSA