Scaffold Ga0209168_10001219

Overview

Basic Information

• Taxon OID: 3300027986
• Scaffold ID: Ga0209168_10001219
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20932
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000272	Metagenome / Metatranscriptome	1408	Y
F004586	Metagenome / Metatranscriptome	432	Y
F075195	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209168_1000121915	F000272	AGGAG	MPQTIAEKTADQIAESVHQASRVTSAVADAIEDGVGVMKRAAKQGGDAAEEILADTAQRLQRHPLLTVATTFAVGFTAGAVIGWMIKQR
Ga0209168_100012192	F000042	AGGA	MKNIKFVVRVNRGGTRAPQYVQRIDPTPIHMTTNRKLALLMGRFTAEDAVESLRNSRCIPELELVQVSA
Ga0209168_100012198	F075195	GGA	LNRVQIGSDNCVKVRDLGFKALVHIKMYGERFEIVSDPFDEGDCIVVRATSGNDPEIRILRLPIAILVGRADRFQK
Ga0209168_100012199	F004586	AGGAG	MTTNEQNKCAHLPCECLAQPGEKYCGQACKEAGSSEVEIACQCDHGSCPLTA