Scaffold Ga0209168

Basic Information
Taxon OID	3300027986 Open in IMG/M
Scaffold ID	Ga0209168_10000392 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209168_10000392 Open in IMG/M

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	44423
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (88.37%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

44423

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

38 (88.37%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000309	Metagenome / Metatranscriptome	1327	Y
F001829	Metagenome / Metatranscriptome	629	Y
F045172	Metagenome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209168_1000039219	F001829	GAGG	MRKQYLHLSAYPCEACAGPVIAGSLGVRENEISKETDIRQVGAICLSCGHRQCAPTEPARARHLMPMEWAPADAVQASRLTSAFVEALNLAELQGSSLRKRQIRTELSCSDLDP
Ga0209168_1000039223	F000309	AGG	MQFGTPGVTMKSEVKQSLERTLDSAVIDSWADLIHEAQTGLIHIEYGFAPTGTLDYLKIWSSLTRGHWLLACEYWMSESTFHGAGVRFDNGYESEGLANILECVMQHQTSFELPENRGRQGLLQISTPTEEDRSAASEWIREAFDRLDSTLAEPALP
Ga0209168_1000039225	F000042	AGTAG	MTNIKFVVRVNHGGTRAPAYVQRIDRSPVQMTTNRKLALMMGKFTAEDAAKSIENSRCIPELVPVQVNT
Ga0209168_1000039239	F045172	AGGAG	VKKVSITRLVGIGLVTICGISVACARAYGQSLTSAPQPSAEIESLTKALTGDWSLSVKFEPSTSAPNGLANTGEETWRPGPGGFTLLEEEHVRFPEADGFLLGIIWWNTTTKTLQGMECQNLLPYTCDINGAQKDITMNWDGRQFVIDEVETSPSGKKSIWHEVWSDITPTSFVQTGEYGDPGGPRKRLFTIHATRITATQSKNEIHGNFPASSATDPAPELQSLEKAVKGNWSTTYEFAPGGISPTGGTGTGEENWRTGPGGYVLMEEEHVHGPAGEMFLIALHWWDETTKSLRGMLCNNSGAAACDFNTYSNSSLNWDGKQLTIDMEFPQNGKKMTWHEIWSGITATSFTQTGEIGEVGGPLKRAVAIHGTKRGDAH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209168_10000392

Overview

Ecosystem & Geography

Associated Families

Sequences