NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209284_10210131

Scaffold Ga0209284_10210131


Overview

Basic Information
Taxon OID3300027983 Open in IMG/M
Scaffold IDGa0209284_10210131 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1006
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater → Freshwater Microbial Communities From Lake Liftoff Mats And Glacier Meltwater In Antarctica

Source Dataset Sampling Location
Location NameLake Fryxell, Antarctica
CoordinatesLat. (o)-77.605Long. (o)163.163Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002264Metagenome / Metatranscriptome576Y
F003376Metagenome490Y

Sequences

Protein IDFamilyRBSSequence
Ga0209284_102101311F003376GGAGVQGQSESRWRVIAHRRGGREARLARSGIRERDTILGHEMRGPAGTERGGVSMAGGREGQGARKGNGLKRLRQIGAEMV
Ga0209284_102101312F002264N/APKWTFEQINFVAGRRGAVVEDDFYNKLEKLNVQHGKRDKILLAHVQCICEAHDTVIRSYYQQIHRSSGADATTSMENIGEQVYV

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